Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00892 ATGAATGTGCTTGCTTTCATAAGCATCATTACTTACATATTAGTCCCTTCTCTAAGAGTTTTTTCCATGGAAGCTGATTCCATTACTGTATCTCAAAGCATCTCAGATGGCATGACCTTAGTTTCCCAAGGAGGGACCTTTGAACTGGGATTCTTCAGTCCTGGAAGCTCCAACAAACGCTATTTAGGAATATGGTACAAGAAGATTCCAACAAGAACCATTGTTTGGGTTGCCAACCGCCAAACCTCAATCAATGTCACTTCTGGGATTCTAATGTTGAAGAGTACAGGAAGTCTTGTCCTCAGCCAAAACGACACTGTCGTTTGGTGTTCAACCCCTCACGAACAAGCAAAGAAACCAGTGGCACAGCTTCTTGATTCTGGCAATCTCGTGGTGAAAGATGAGGAAGATGCAAACCCAGAAGAAGAAGAAGGCTATTTGTGGCAAAGCTTTGATTATCCATCTGATACGATGTTGCCAGGTATGAAGATAGGGTGGGATCTCAGAAATGGTCTCAATAGGCGTCTAACAGCTTGGAAAAGCCCAGAAGATCCATCTCCAGGAGATTTTTCTTGGGGTATAGAGACTTATAACTATCCAGAATCAGTTATGAACAAGGGAAATAAGAAGTACTATAGACCTGGACCTTGGAATGGCCTGTATCAAAGTGGTGCCCCAGAACTAAAGCCTAACTCTTTGTTTGATTACAACTTTGTCTCTGATCAGAATGAGGTCTACTACACTTATACTCTCAGAACTAACTCTTTAGTTTCAATCTTAGTGATGAACCAAACCAATTATGTTCGTAGTCGCTATGTGTGGGTGGAAACAGATCAAAAGTGGAAGATTTATGCATCACGTCCAGGAGACTACTGTGACACCTATAACCTATGTGGAGCTAATGGGAATTGTATCATTTCTGATTCTCCAGTCTGTCAATGTTTAAAAGGGTTTAGGCCTAAGTCATTAGAAATGTGGAACTCAATGGACTGGTCACAAGGCTGTGTTCATAAGAAACCATTGAGCTGCGACAAGTTCAATCAAAAGGATGGGTTTCTCAAAGTGAGTAGTTTGAAACTTCCAGATACTACATTTACATGGTTAGATGAAACTATTGGGTTAGAGGAATGCAGAACCAAGTGCTTAAATAACTGTTCTTGCATGGCATATACAAATTCAGATATTAGAGGGAAAGGAAGGGGATGTGCCATATGGTTTGGAGATCTAATTGATATTAGACAAATGCCAGTTGGTGGGCAGGATCTATATATTCGAATGAATGCTTCAGAATTAATTGAAGAGGCAGAAACAGGACATAAGAAGTTAACAAAGACAATTATTGCCATCATTGCCATTGCAACTTCAGGGATGCTTTTACTTGGGTGCATTTGGATCCTTAAAGTCTGCAAAAACAATAGTGATAAAGTTAAACATGTAGATCAGGATCAGAACAATGGAAAACATTCTGAAGATTTGGATCTTCCTTTGCTTGACTTGTCAGCTATTGTCTATGCCACTGGTAACTTCTCCATTGACAACAAAATAGGAGAAGGTGGTTTTGGACCTGTGTATTTGGGAAAATTGGTAAATGGGGAAGAAATTGCGGTGAAGAGGCTTTCAAAAAGTTCAGGACAAGGAATGACCGAATTCAAGAATGAAGTAAAACTGGTCGCAAAACTTCAACACCGTAATCTTGTGAAGCTTCTAGGATGTTGCATTCAAGGAGAAGAAAAAATCCTGGTTTATGAATACATGTCTAATAGCAGCCTGGATTCCTTCATTTTTGATGATGCAAAAGGTGAAGTTTTAGATTGGTCTAAACGCTACCACATTATTTGTGGTGTTGCTCGAGGCCTTTTATATCTTCATCATGATTCTAGACTGAGAATTGTTCACAGGGATCTTAAGGCAAGTAATGTGCTACTTGATGACATGTGGAACCCAAAAATAGCAGATTTTGGGACGGCAAGAACTTTTGGAGGAGACCAGATTGAAGGAAATACAAACAGAGTAGTAGGGACTTATGGTTACATGGCACCAGAATACGCTATTGATGGGGTATTTTCAATAAAATCCGATATCTTCAGCTTCGGTATTTTGCTATTGGAGATAATATCTGGCAAGAGAAATAGAGGGTTTTATCATGCAAACCACAGCCAAAACCTTATTGGTCATGCATGGAGAAAATGGAAGGAAGGCAAGGCTTTGGAACTAATTGACAAGAATATTGTGGGCTCATGCATTGAATCAGAAGTCCTAAGATGCATCCATATTAGCCTATTATGTGTAGAAGAACATCCAAAGGATAGGCCTAACATGTCCTCAGTGATTCTAATGCTGGGAAGTGAAATGGAGTTGGCTAACCCTAAGCAACCAGATTTCTATATGAGCAAGTTCTCAGACGAAGCGAATTCCTCACAACCTGCAGATTTTGGAACATCCAATGAGATAACCATTACTCAATTAATCGCTCGATGA 2478 0.3983 MNVLAFISIITYILVPSLRVFSMEADSITVSQSISDGMTLVSQGGTFELGFFSPGSSNKRYLGIWYKKIPTRTIVWVANRQTSINVTSGILMLKSTGSLVLSQNDTVVWCSTPHEQAKKPVAQLLDSGNLVVKDEEDANPEEEEGYLWQSFDYPSDTMLPGMKIGWDLRNGLNRRLTAWKSPEDPSPGDFSWGIETYNYPESVMNKGNKKYYRPGPWNGLYQSGAPELKPNSLFDYNFVSDQNEVYYTYTLRTNSLVSILVMNQTNYVRSRYVWVETDQKWKIYASRPGDYCDTYNLCGANGNCIISDSPVCQCLKGFRPKSLEMWNSMDWSQGCVHKKPLSCDKFNQKDGFLKVSSLKLPDTTFTWLDETIGLEECRTKCLNNCSCMAYTNSDIRGKGRGCAIWFGDLIDIRQMPVGGQDLYIRMNASELIEEAETGHKKLTKTIIAIIAIATSGMLLLGCIWILKVCKNNSDKVKHVDQDQNNGKHSEDLDLPLLDLSAIVYATGNFSIDNKIGEGGFGPVYLGKLVNGEEIAVKRLSKSSGQGMTEFKNEVKLVAKLQHRNLVKLLGCCIQGEEKILVYEYMSNSSLDSFIFDDAKGEVLDWSKRYHIICGVARGLLYLHHDSRLRIVHRDLKASNVLLDDMWNPKIADFGTARTFGGDQIEGNTNRVVGTYGYMAPEYAIDGVFSIKSDIFSFGILLLEIISGKRNRGFYHANHSQNLIGHAWRKWKEGKALELIDKNIVGSCIESEVLRCIHISLLCVEEHPKDRPNMSSVILMLGSEMELANPKQPDFYMSKFSDEANSSQPADFGTSNEITITQLIAR 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00892 825 ProSiteProfiles Bulb-type lectin domain profile. 25 145 IPR001480 -
Accr13g00892 825 CDD PAN_AP_plant 340 425 - -
Accr13g00892 825 Pfam Protein tyrosine and serine/threonine kinase 510 778 IPR001245 GO:0004672|GO:0006468
Accr13g00892 825 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 473 584 - -
Accr13g00892 825 SMART ntp_6 347 426 IPR003609 -
Accr13g00892 825 CDD STKc_IRAK 515 780 - -
Accr13g00892 825 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 771 - -
Accr13g00892 825 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 151 - -
Accr13g00892 825 ProSiteProfiles Protein kinase domain profile. 509 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr13g00892 825 ProSitePatterns Serine/Threonine protein kinases active-site signature. 630 642 IPR008271 GO:0004672|GO:0006468
Accr13g00892 825 Pfam PAN-like domain 347 412 IPR003609 -
Accr13g00892 825 ProSiteProfiles PAN/Apple domain profile. 343 427 IPR003609 -
Accr13g00892 825 CDD B_lectin 31 154 IPR001480 -
Accr13g00892 825 SMART serkin_6 509 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr13g00892 825 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 585 788 - -
Accr13g00892 825 Pfam S-locus glycoprotein domain 212 322 IPR000858 GO:0048544
Accr13g00892 825 Gene3D Phosphorylase Kinase; domain 1 468 584 - -
Accr13g00892 825 PIRSF SRK 1 825 IPR024171 GO:0004674
Accr13g00892 825 Pfam D-mannose binding lectin 73 180 IPR001480 -
Accr13g00892 825 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 185 IPR036426 -
Accr13g00892 825 Gene3D Transferase(Phosphotransferase) domain 1 585 802 - -
Accr13g00892 825 Gene3D Hepatocyte Growth Factor 344 422 - -
Accr13g00892 825 SMART blect_4 31 154 IPR001480 -
Accr13g00892 825 ProSiteProfiles EGF-like domain profile. 288 324 IPR000742 -
Accr13g00892 825 SUPERFAMILY Protein kinase-like (PK-like) 494 798 IPR011009 -
Accr13g00892 825 Gene3D - 20 151 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00892 Accr-Chr13 10263314 10267288 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00892 446 794 Receptor kinase-like Gene Family AT4G23230 57.550 2.46e-131 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Accr13g00892 PK_Tyr_Ser-Thr 5.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00892 - - qsu:111985779 1055.43