Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00864 ATGAGCACCAATATCAATAATTCAGCTCTCTCACCTGAGTCTCACAGAACTGGTGTTAGAGCTTCTGGTTACCAAATTCCCACCCATAGGAACTCTTTCGAGGTGTCTGAGTTGTCCCGGTCTCCTTCTACGCATACCATTCCTCCTCAGATGACACCAAGTCCACTGAATCCTCTGTGGTATATGGGAGATAGAAGGCAAGCAGGGCTCTACAGCATACCTGAAAGAGACTCTTACGAGGTGCCTGTGTACTACCAAACTTATTCAAGATATGCCACTCCTGTTCAGGCGACACCAAATTCACAGAATCCTCCGTGGTATCCAGCAGATAGAAGGCATGCAGGACTCTACAGTACACCTGATGACTCTTATGAGGTGCCAGTGTTCTACCGATCTTCTTCCAGACAAGCCACCCCTTATTTTCAGGATGAGAGAACATCAAATGCAGCGAATCGTCCACGATTTCTGGAAGACAGTTTTCCAGCACGACTGCACATTCTCAATGGAGATACAGGAATGGGTTTCAACCACAGGATCAGAGAAACTCACCGGCCATCAGTTCCGGCTCGAAGATCCGCACGCCAATCGGACACACAAGCTCCAACGGCGATAGAAAATCCCAGATCTAGGGCATTGAGCAAGCTGAAGAAAGAAATCTACGAACCAAATATTCGAAGTTCAAAAACACTTGCGAAGAAATTAAGCTCCTATTACAGAGATTCGAAAGATGTGAATGCGTTGAAGGAGATGGAGAACAAGGAAAAGAACGAAGAGAGAAAGAGTTGCGCGGTGTGCTTAGAGGATTTCGTGCCGAAACAAGAGGTAATGGTGACGCCTTGCAAGCACATGTTTCATGAGGATTGTATAATGCCATGGCTGAGAAGCCAAGGTCAGTGTCCGATCTGTAGATTTGTGATCTGCGAAAAAGAGAGGGAGAATCCATTGCCGGTGAACGACGACGAAATTGGCACAAGTTTCGTAATAGCAGGCGAGCTTATGTCTATTGTGAGGGCCATGGAAGAAGCCTTCCGATTCGGTCCTGAAACTCACTGA 1053 0.4682 MSTNINNSALSPESHRTGVRASGYQIPTHRNSFEVSELSRSPSTHTIPPQMTPSPLNPLWYMGDRRQAGLYSIPERDSYEVPVYYQTYSRYATPVQATPNSQNPPWYPADRRHAGLYSTPDDSYEVPVFYRSSSRQATPYFQDERTSNAANRPRFLEDSFPARLHILNGDTGMGFNHRIRETHRPSVPARRSARQSDTQAPTAIENPRSRALSKLKKEIYEPNIRSSKTLAKKLSSYYRDSKDVNALKEMENKEKNEERKSCAVCLEDFVPKQEVMVTPCKHMFHEDCIMPWLRSQGQCPICRFVICEKERENPLPVNDDEIGTSFVIAGELMSIVRAMEEAFRFGPETH 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00864 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 224 307 IPR013083 -
Accr13g00864 350 Pfam Ring finger domain 261 303 IPR001841 -
Accr13g00864 350 MobiDBLite consensus disorder prediction 183 207 - -
Accr13g00864 350 ProSiteProfiles Zinc finger RING-type profile. 262 303 IPR001841 -
Accr13g00864 350 FunFam RING/U-box superfamily protein 246 320 - -
Accr13g00864 350 SMART ring_2 262 302 IPR001841 -
Accr13g00864 350 SUPERFAMILY RING/U-box 253 310 - -
Accr13g00864 350 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 122 304 - -
Accr13g00864 350 MobiDBLite consensus disorder prediction 191 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00864 Accr-Chr13 9850563 9853264 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00864 206 346 C3H Transcription Factor Family AT3G58720 44.898 1.01e-36 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00864 - - pcin:129314308 444.121