Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00831 ATGGCGGCGATGAGAGCGGCAGTGGCGGCGCCTCGCGGTCTAAGGCGGCTATTCTCAACCACTACAACTTCAACCTTCATGCCTCCTCCTCCGACCTCGCCGGGGGCCCCTGGTCGAGAGAAGGCGGAGCCCAGTCCCAATCTCTTCGTCTCTGGGCTTAGCAAACGTACTACTACAGAAAAGCTGCACGAGGCATTTTCCCAGTTTGGTGAAGTTGTTAATGCTAGAGTGGTAACTGACAGAGTATCAGGTTACTCTAAGGGGTTTGGCTTTGTAAGATATGCCACCATAGAAGAAGCTGCAAAAGGCATTGAGGGCATGGATGGAAAGTTTCTGGATGGTTGGGTTATATTTGCGGAGTATGCGAAACCAAGACCACCACCAGGACAACCTATGCCTCCTCCGTATGGCCAACATTAA 420 0.5214 MAAMRAAVAAPRGLRRLFSTTTTSTFMPPPPTSPGAPGREKAEPSPNLFVSGLSKRTTTEKLHEAFSQFGEVVNARVVTDRVSGYSKGFGFVRYATIEEAAKGIEGMDGKFLDGWVIFAEYAKPRPPPGQPMPPPYGQH 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00831 139 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 124 IPR000504 GO:0003723
Accr13g00831 139 SUPERFAMILY RNA-binding domain, RBD 26 137 IPR035979 GO:0003676
Accr13g00831 139 MobiDBLite consensus disorder prediction 19 45 - -
Accr13g00831 139 SMART rrm1_1 47 120 IPR000504 GO:0003723
Accr13g00831 139 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 114 IPR000504 GO:0003723
Accr13g00831 139 Gene3D - 24 130 IPR012677 -
Accr13g00831 139 FunFam RNA recognition motif-containing protein 24 134 - -
Accr13g00831 139 PANTHER NUCLEOLAR PROTEIN 8 27 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00831 Accr-Chr13 9389801 9392833 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00831 47 125 Eukaryotic Initiation Factors Gene Family AT2G23350 36.709 6.88e-11 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00831 - - mnt:21399461 173.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr13g00831 13 9389801 9392833 Accr13g00831 13 9389801 9392833 ECH