Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00830 ATGTCAGCTACAGTCCTTGAGGGGAATGATGCAGTCACTGGCCACATAATCTCCACCACAATTGGAGGCAAAAATGGGGAACCTAAGCAGACCATCAGTTACATGGCAGAACGCGTTGTTGGCACTGGTTCATTTGGGATTGTTTTCCAGGCAAAGTGCTTAGAGACTGGGGAAGCAGTGGCTATAAAGAAGGTCTTGCAGGACAGGCGGTACAAGAATCGTGAGCTGCAGCTAATGCGTTTGATGGATCACCCAAATGTCATTTCCCTGAAGCACTGTTTCTTCTCTACAACAAGCAGAGATGAACTTTTTCTCAATTTGGTTATGGAATATGTCCCTGAAACATTGTACCGAGTTCTAAAACACTATACTAGTATGAATCAAAGGATGCCTCTCATCTATGTGAAACTTTATACATATCAAATCTTCAGGGGACTAGCATACATCCATACAGTACCAGGAGTTTGCCATAGAGATGTGAAACCTCAAAATCTTTTGGTCGATCCTCTCACTCATCAAGTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTTCTGGTCAATGGTGAATCAAACATTTCATACATATGTTCACGTTACTATCGGGCTCCAGAACTAATATTTGGTGCAACAGAATACACAACTTCTATTGATATTTGGTCAGGTGGTTGTGTCCTTGCTGAGCTGCTTTTAGGTCAGCCATTATTTCCAGGAGAAAATCAGGTGGACCAACTTGTGGAAATCATCAAGGTCCTTGGTACTCCAACTCGAGAAGAAATTCGTTGCATGAACCCTAATTATACAGATTTTAGATTCCCTCAGGTTAAAGCTCACCCTTGGCACAAGGTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTATATCAAGGCTTCTCCAGTATTCGCCAAGTCTTCGCTACACTGCGCTGCAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGGGAGCCCAATGCCCGACTGCCCAACGGCCGTCCACTGCCCCCACTTTTCAATTTCAAACAGGAACTGTCTGGAGCTTCGCCTGAATTGATAAATAGGCTCATCCCAGAGCATATTAGGCGGCAGATTGGCCTCAACTTCCCTCATCCGGTTACATAG 1122 0.4439 MSATVLEGNDAVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSRDELFLNLVMEYVPETLYRVLKHYTSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLTHQVKLCDFGSAKVLVNGESNISYICSRYYRAPELIFGATEYTTSIDIWSGGCVLAELLLGQPLFPGENQVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQVKAHPWHKVFHKRMPPEAIDLISRLLQYSPSLRYTALQACAHPFFDELREPNARLPNGRPLPPLFNFKQELSGASPELINRLIPEHIRRQIGLNFPHPVT 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00830 373 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 2 363 - -
Accr13g00830 373 ProSitePatterns Protein kinases ATP-binding region signature. 40 64 IPR017441 GO:0005524
Accr13g00830 373 SMART serkin_6 34 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr13g00830 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Accr13g00830 373 CDD STKc_GSK3 29 321 IPR039192 -
Accr13g00830 373 Pfam Protein kinase domain 34 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr13g00830 373 SUPERFAMILY Protein kinase-like (PK-like) 33 344 IPR011009 -
Accr13g00830 373 FunFam Shaggy-related protein kinase kappa 114 361 - -
Accr13g00830 373 ProSiteProfiles Protein kinase domain profile. 34 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr13g00830 373 FunFam Glycogen synthase kinase-3 beta 18 113 - -
Accr13g00830 373 Gene3D Transferase(Phosphotransferase) domain 1 114 361 - -
Accr13g00830 373 Gene3D Phosphorylase Kinase; domain 1 19 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00830 Accr-Chr13 9359604 9362830 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00830 38 356 MAP Kinase Gene Family AT3G59790 35.329 2.13e-57 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Accr13g00830 Pkinase 2.1e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00830 K14502 - qsu:111995841 731.095