Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00829 ATGTCCGCTGTGCCGTTGGGACCGCACCAGCACCAACCGCTGGCCGCGGCGGCAGCTCCCCAGCCTCCACCTCCATTGCCGGCGCAAGCTGAGAATGACAAGGAAATGTCAGCTACAGTCCTTGAGGGGAATGATGCAGTCACTGGCCACATAATCTCCACCACAATTGGAGGCAAAAATGGGGAACCTAAGCAGACCATCAGTTACATGGCAGAACGCGTTGTTGGCACTGGTTCATTTGGGATTGTTTTCCAGGCAAAGTGCTTAGAGACTGGGGAAGCAGTGGCTATAAAGAAGGTCTTGCAGGACAGGCGGTACAAGAATCGTGAGCTGCAGCTAATGCGTTTGATGGATCACCCAAATGTCATTTCCCTGAAGCACTGTTTCTTCTCTACAACAAGCAGAGATGAACTTTTTCTCAATTTGGTTATGGAATATGTCCCTGAAACATTGTACCGAGTTCTAAAACACTATACTAGTATGAATCAAAGGATGCCTCTCATCTATGTGAAACTTTATACATATCAAATCTTCAGGGGACTAGCATACATCCATACAGTACCAGGAGTTTGCCATAGAGATGTGAAACCTCAAAATCTTTTGGTCGATCCTCTCACTCATCAAGTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTTCTGGTCAATGGTGAATCAAACATTTCATACATATGTTCACGTTACTATCGGGCTCCAGAACTAATATTTGGTGCAACAGAATACACAACTTCTATTGATATTTGGTCAGGTGGTTGTGTCCTTGCTGAGCTGCTTTTAGGTCAGCCATTATTTCCAGGAGAAAATCAGGTGGACCAACTTGTGGAAATCATCAAGGTCCTTGGTACTCCAACTCGAGAAGAAATTCGTTGCATGAACCCTAATTATACAGATTTTAGATTCCCTCAGGTTAAAGCTCACCCTTGGCACAAGGTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTATATCAAGGCTTCTCCAGTATTCGCCAAGTCTTCGCTACACTGCGCTGCAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGGGAGCCCAATGCCCGACTGCCCAACGGCCGTCCACTGCCCCCACTTTTCAATTTCAAACAGGAACTGTCTGGAGCTTCGCCTGAATTGATAAATAGGCTCATCCCAGAGCATATTAGGCGGCAGATTGGCCTCAACTTCCCTCATCCGGTTACATAG 1227 0.4629 MSAVPLGPHQHQPLAAAAAPQPPPPLPAQAENDKEMSATVLEGNDAVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSRDELFLNLVMEYVPETLYRVLKHYTSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLTHQVKLCDFGSAKVLVNGESNISYICSRYYRAPELIFGATEYTTSIDIWSGGCVLAELLLGQPLFPGENQVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQVKAHPWHKVFHKRMPPEAIDLISRLLQYSPSLRYTALQACAHPFFDELREPNARLPNGRPLPPLFNFKQELSGASPELINRLIPEHIRRQIGLNFPHPVT 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00829 408 SMART serkin_6 69 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr13g00829 408 FunFam Shaggy-related protein kinase kappa 149 396 - -
Accr13g00829 408 CDD STKc_GSK3 64 356 IPR039192 -
Accr13g00829 408 FunFam Glycogen synthase kinase-3 beta 53 148 - -
Accr13g00829 408 ProSitePatterns Protein kinases ATP-binding region signature. 75 99 IPR017441 GO:0005524
Accr13g00829 408 Pfam Protein kinase domain 69 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr13g00829 408 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Accr13g00829 408 ProSiteProfiles Protein kinase domain profile. 69 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr13g00829 408 MobiDBLite consensus disorder prediction 1 32 - -
Accr13g00829 408 Gene3D Transferase(Phosphotransferase) domain 1 149 396 - -
Accr13g00829 408 Gene3D Phosphorylase Kinase; domain 1 54 148 - -
Accr13g00829 408 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 33 398 - -
Accr13g00829 408 SUPERFAMILY Protein kinase-like (PK-like) 68 379 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00829 Accr-Chr13 9357908 9362830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00829 73 391 MAP Kinase Gene Family AT3G59790 35.329 6.54e-57 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Accr13g00829 Pkinase 2.8e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00829 K14502 - qsu:111995841 739.954