LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr13g00816	ATGGATGAGAGACAAAATGATGCAGGGCCCGCAGAACAAGGGCCATCAAACTCTTCATGGTGGCCATCAGACTTTGTTAAAAAATTTGGATCTGTTTCTCTGGGTTCTCAAGAAGAGACCTTAAATAATAAAGAATCACCTAGACAGTTTGAGCAAAATGTTTTGTCACCTAATAGAGCATCGCAAATTCTCTGGCGCACTGGAATGCTTTCAGAACCAATACCAAATGGTTTTTATTCAGTCATTCCCGATAAAAGGCTCAAGGAAATTTTTGATAATATTCCTACTATGGATGAGATTCATGTTTTGGGTGGAGATGGTCTAAAGGCTGATGTCATTTTGGTGGACACTGAGAAAGATAAAAAATTATCTATGTTGAAGCAATTGATCGTGGCCCTAGTTAAAGGATTGAGCTCTAATCCAGCTGCAATAATAAAAAAGATAGCCGGACTTGTTTCTGATTTTTATAAGCGATCAAATGTGGAAAGTCCAGCAAAAGCTGCACTAGAGGAAAACTCCCACATGTTTGAGAATCGCGGTGCCCAGATACTGGGGCAAATAAAGAATGGTTCATGCCGTTGTCGAGCAATCTTATTTAAAGTGTTAGCAGATACTGTAGGTCTTGAAAGTACGCTCATCGTGGGTTTTCCAAATGATGGAGATGTTGAATGTGTGGATTCATACAAGCATATGTCTGTGCTTGTTGTATTGAATTCTGTGGAACTGCTAGTTGATCTCATGCGATGCCCTGGTCAATTATTACCTCGATCAAACAAGGAAGTTTTCATGTCACATATTTCTGAAGCAGGAGAGAGTGATTCTGCAGAAAATGATTCCTGTGATTCACCACTAGAACCAAACAGTCCTTTATATGGGGTTTCAGATAAAGTGGATCCTGACAGCGCTGGAAAGGAGGAGAACCTGCCGTTCCAGAGGAGATTTGACACTTCTTCAAATATATCAGGCCTTTCTTTGCGAAATTTGATGTTACGGTCAAATACCAGTCTGGATAGGAAATTGAGTATTTCTCATAGTGAACCCAATATTGCAATTGCATTTGGTCGGCGTAGTCGGAGAAAGGTCATTGCTGAACAGAGGACCGCTAGTTCCAGTCCAGAGCATCCATCCATCAAAGCACGTGGACAGTCCATTCTTAGCGGTGATCGGAAATCATTCAGAGAGTTTGCTGATGATGAGGCTGCATCAAGGTCAGATGGTGCATCTCCATCAGAAGCTCGTAGGATTAGAAGAAGAAGCATCAGCATTACACCTGAGATCGGTGATGATATCGTAAGGGCTGTACGTGCAATGAATGAAACACTGAAGCAGAAGCGTCTTTTGACAGAGCGAGGGGATAATAGCTCATTCTCACCTTCTGCAAATGATACAAATAGGGTTGGTAACCTTCAGAAAAATATGTCAGATTTTCTTCGAGATGGTCATGAGAGATCTTTGAATTCTCCTCCACCTGATCAAGTAAATTCCCAAAAAGCAATGTCATTACCCTCTTCACCGCATGGTTACAGGGGTCAGACATCTGAGAGAAGTGGACTATCGAGGTATGGAGTGAACGAATTGCAGTCAACATGGAATAAAGTCCTTGAATCTTCAATGTTTAATAATAAGCCCCTCTTACCATATGAAGAATGGAATATTGACTTCTCAGAAATAACTGTTGGAACGCGTGTTGGGATTGGGTTTTTTGGAGAAGTCTTCCGTGGTGTATGGAATGGCACAGAAGTTGCAATCAAGGTTTTTCTGGAGCAAGATTTAACTGCTGAAAACATGGAAGATTTCTGCAATGAGATATCAATTCTAAGCCGGCTCCGACATCCAAATGTGATTTTATTTCTTGGGGCGTGCACAAAGCCTCCACGCTTGTCAATGGTTACTGAGTACATGGAAAGGGGATCACTGTATTACTTGATCCATGTGAGCGGCCAAAAGAAGAAGCTTAACTGGCAGAGAAGACTGAAGATGTTGCGAGATATATGCAGGGGGCTGATGTGCATACACAGAATGAAGATAGTTCACCGTGACCTGAAAAGTGCAAATTGTCTGGTGAACAAGCATTGGACTGTGAAGATATGTGACTTTGGGCTTTCAAGGATCATGACAGAGTCTAATGTCAAAGACACTTCATCGGCTGGAACTCCAGAATGGATGGCTCCTGAACTTATTCGGAACGAACCATTGGATGAAAAATGCGATATATTTAGCCTGGGGGTGTTGATGTGGGAGCTTTGTACTTTGAGCAGGCCTTGGGAGGGTATTCCACCCGAAAGGGTGGTTTATGCCGTTGCTAACGAGGGGTCTAGACTGGACATTCCTGAAGGCCCGATAGGCAAGCTCATCGCAGATTGTTGGGCAGAACCAAACGAACGGCCAAGTTGTGAGGAGATCCTCTCTCGCTTGCCTGATTGCGAGTAG	2430	0.4284	MDERQNDAGPAEQGPSNSSWWPSDFVKKFGSVSLGSQEETLNNKESPRQFEQNVLSPNRASQILWRTGMLSEPIPNGFYSVIPDKRLKEIFDNIPTMDEIHVLGGDGLKADVILVDTEKDKKLSMLKQLIVALVKGLSSNPAAIIKKIAGLVSDFYKRSNVESPAKAALEENSHMFENRGAQILGQIKNGSCRCRAILFKVLADTVGLESTLIVGFPNDGDVECVDSYKHMSVLVVLNSVELLVDLMRCPGQLLPRSNKEVFMSHISEAGESDSAENDSCDSPLEPNSPLYGVSDKVDPDSAGKEENLPFQRRFDTSSNISGLSLRNLMLRSNTSLDRKLSISHSEPNIAIAFGRRSRRKVIAEQRTASSSPEHPSIKARGQSILSGDRKSFREFADDEAASRSDGASPSEARRIRRRSISITPEIGDDIVRAVRAMNETLKQKRLLTERGDNSSFSPSANDTNRVGNLQKNMSDFLRDGHERSLNSPPPDQVNSQKAMSLPSSPHGYRGQTSERSGLSRYGVNELQSTWNKVLESSMFNNKPLLPYEEWNIDFSEITVGTRVGIGFFGEVFRGVWNGTEVAIKVFLEQDLTAENMEDFCNEISILSRLRHPNVILFLGACTKPPRLSMVTEYMERGSLYYLIHVSGQKKKLNWQRRLKMLRDICRGLMCIHRMKIVHRDLKSANCLVNKHWTVKICDFGLSRIMTESNVKDTSSAGTPEWMAPELIRNEPLDEKCDIFSLGVLMWELCTLSRPWEGIPPERVVYAVANEGSRLDIPEGPIGKLIADCWAEPNERPSCEEILSRLPDCE	809

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr13g00816	809	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	676	688	IPR008271	GO:0004672\|GO:0006468
	Accr13g00816	809	Pfam	Ethylene-responsive protein kinase Le-CTR1	58	253	-	-
	Accr13g00816	809	Gene3D	Transferase(Phosphotransferase) domain 1	636	809	-	-
	Accr13g00816	809	MobiDBLite	consensus disorder prediction	1	23	-	-
	Accr13g00816	809	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	363	805	-	-
	Accr13g00816	809	MobiDBLite	consensus disorder prediction	270	310	-	-
	Accr13g00816	809	CDD	STKc_MAP3K-like	563	805	-	-
	Accr13g00816	809	Gene3D	Phosphorylase Kinase; domain 1	550	635	-	-
	Accr13g00816	809	SMART	serkin_6	557	803	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr13g00816	809	MobiDBLite	consensus disorder prediction	479	516	-	-
	Accr13g00816	809	MobiDBLite	consensus disorder prediction	450	467	-	-
	Accr13g00816	809	ProSitePatterns	Protein kinases ATP-binding region signature.	563	584	IPR017441	GO:0005524
	Accr13g00816	809	MobiDBLite	consensus disorder prediction	364	416	-	-
	Accr13g00816	809	FunFam	Serine/threonine-protein kinase isoform 1	547	635	-	-
	Accr13g00816	809	SUPERFAMILY	Protein kinase-like (PK-like)	530	804	IPR011009	-
	Accr13g00816	809	MobiDBLite	consensus disorder prediction	445	467	-	-
	Accr13g00816	809	ProSiteProfiles	Protein kinase domain profile.	557	809	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Accr13g00816	809	MobiDBLite	consensus disorder prediction	487	516	-	-
	Accr13g00816	809	Pfam	Protein tyrosine and serine/threonine kinase	558	805	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr13g00816	Accr-Chr13	9122120	9130703	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr13g00816	1	809	MAP Kinase Kinase Kinase	AT3G58640	69.608	0.0	1150

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL_CTR1-DRK-1	Accr13g00816		PK_Tyr_Ser-Thr	1.1e-61	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr13g00816	-		-	qsu:112032500	1307.74