Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00803 ATGTCGCAGACTGGGAAGTCGATGCAGGCACTGGGCTTCGATTCTCTCTCTTCTAGATTCCACGATTTGTTGGGTTTTGATGAAAACAAGCCTGATTTTAAAGAACTAGATCTAGGTTCTCCTGTTTCTCCATTGAAAACCCCTGCCTCTGTTAATGCTGCCGCTGCCGGCGCTTCTAACACCACCAGCTGCAGCTCCACCTCCTCTGCTGGCTCGGTTTCCGGCAGCAGAAATACTGTCGCGAAGTTTCCCAGTAAACCAGACACGAAGCCGAGGAACAACTCCGGCGAGCTCCGTGAGACCAACTCAAACGCCTCTGAGAACCTTCAATCGGCTTCGGCATCCCCACGCACCAAGCCTGGTCATAGAAGATCGGTTTCAGCTGGAGCCCCGTTAATTTTCTCCCGTGGAAGTTCTAGCAGCTTGGGGAATAACATTAATTCAAATGGTGCTAATTCAGGGACTAATTTTCTCCCAACCGGCAATATTTGTCCGACAGGGAGGATCTCAAAAACCATTTTGGCGCCTAGAACGCCCAATAGAACTGATGTTTTGGGTTCAGGGACGGTAAACTACGGCCGAGGCAACATAATGCGCGGTGGCGGGAAATTGGGCAATGGAGGGCACGCAACCGTCGATGACAATGTCGCCGGAAATTCTCAGCTCGGAGGGGTTTCGGGCATTGTGAAACAGGCGATGAGTGGTTCGGATCCTGAGGAGGTGAAAAATGCCGGAAATGAGCTATACAGAAGCGGTTACTTTGCGGAGGCATTGTCGTTGTACGATCGCGCAATTTCCATATCACCCAATAATCCTGCCTACCGGAGTAATCGGGCGGCAGCGTTGACGGCGGTGGGGAAGTTGGCTGAGGCAGCGAAGGAGTGCGAAGAGGCTGTGAAATTGGACCCTGGTTATGCCAGGGCTCATCAGAGACTGGCTTCACTATATATGCGCTTTGGGCAGGTTGAGAATGCACAGAGCCATCTCTGTGTCCCTGGAAAACAGGTGGATCAATCTGAACTGTACAAGTTGAAGCTCTTGGAGAAGCATTTGAAAAGATGTGCAGAAACACGAAAGATTGGTGATTGGAAGAACACACTAAGGGAATTAGACGCAGCTATTGCTGTTGGAGCAGATTTCTCGCCCCAGCTTGTTGCTTGCAAAGCTGAAGCCTATTTGAAACTTCATCTACTTGAGGACGCTGAGTCTACCCTCTCAAACATTCCTAAGCTGGAGGGTTGCTCTCAAACCAAGTTCTTTGGTATGATTGGTGAAGCTTATGTTCCCTTTGTTCGAGCTCAGGTTGAGATGACCTTAGGACGGTTCGAGAATGCAGTAGCAGAAGCAGAAAAGGCTAGTTTGATAGATTATAGCAATGTGGAAGTTGCGAGGGTAGTAAATACTGTGAAAATAGTGGCAAGGGCTCGCTCTCGAGGCAATGATCTTTTTGGCCATGGAAAATTTTCTGAAGCTTGCTCTGCTTATGGAGAAGGCCTTAAATATGATAGTTCCAACTATGTTTTGTTCTGCAATAGAGCTGTTTGCTGGTCTAAACTTGGACTGTGGGAAAAGTCTGTGGATGACTGCAACCATGCTCTGCTAATACTACCAAACTGTACCAAGGCCCTTCTCCGTAGGGCTGTCTCAAATTCAAAGCTTGAAAGGTGGGGAGATGCTATAAGAGATTATGAGGCATTAAAGCGTGAACTTCCTGGAGATAGTGTGGTTGCTGAGTCCCTCCATCAGGCTCAGCTTGCATTAAGGAAATCTCGTGGCGAAGATTGTGGTTCAAAAATTGTTTTTGAGGTTGAAGGGGTCTCTACATTAGATAGATTAAAAGCCGCAATTGCTTCTTCTGGTATCTCAGTCGTTCATTTCAAGAAGGCATCTAATGAACAATGTCAAGAAATATCCGCGTTCATAAATACGCTCTGCATTCGATACCCATATGTTAAATTCATCAAGTTGGATGTGGAAGAGTGTACAAGTATCGCAAAAGCTGAGAGCATAAGAGCTGTGCCAACCTTCAGAATCTATGCAAATGGAGAGAAGGTGATGGAGATGATCAGGCCAAGCCATCAGTTGTTGGAGGACTCTGTGAGGAACTGTTGTAATCTCTAG 2121 0.4734 MSQTGKSMQALGFDSLSSRFHDLLGFDENKPDFKELDLGSPVSPLKTPASVNAAAAGASNTTSCSSTSSAGSVSGSRNTVAKFPSKPDTKPRNNSGELRETNSNASENLQSASASPRTKPGHRRSVSAGAPLIFSRGSSSSLGNNINSNGANSGTNFLPTGNICPTGRISKTILAPRTPNRTDVLGSGTVNYGRGNIMRGGGKLGNGGHATVDDNVAGNSQLGGVSGIVKQAMSGSDPEEVKNAGNELYRSGYFAEALSLYDRAISISPNNPAYRSNRAAALTAVGKLAEAAKECEEAVKLDPGYARAHQRLASLYMRFGQVENAQSHLCVPGKQVDQSELYKLKLLEKHLKRCAETRKIGDWKNTLRELDAAIAVGADFSPQLVACKAEAYLKLHLLEDAESTLSNIPKLEGCSQTKFFGMIGEAYVPFVRAQVEMTLGRFENAVAEAEKASLIDYSNVEVARVVNTVKIVARARSRGNDLFGHGKFSEACSAYGEGLKYDSSNYVLFCNRAVCWSKLGLWEKSVDDCNHALLILPNCTKALLRRAVSNSKLERWGDAIRDYEALKRELPGDSVVAESLHQAQLALRKSRGEDCGSKIVFEVEGVSTLDRLKAAIASSGISVVHFKKASNEQCQEISAFINTLCIRYPYVKFIKLDVEECTSIAKAESIRAVPTFRIYANGEKVMEMIRPSHQLLEDSVRNCCNL 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00803 706 Pfam Tetratricopeptide repeat 243 305 - -
Accr13g00803 706 SUPERFAMILY Thioredoxin-like 511 693 IPR036249 -
Accr13g00803 706 Gene3D Glutaredoxin 597 703 - -
Accr13g00803 706 Gene3D Tetratricopeptide repeat domain 236 592 IPR011990 GO:0005515
Accr13g00803 706 MobiDBLite consensus disorder prediction 28 130 - -
Accr13g00803 706 FunFam TPR repeat-containing thioredoxin TTL4 599 704 - -
Accr13g00803 706 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 26 701 IPR044534 -
Accr13g00803 706 SUPERFAMILY TPR-like 237 461 IPR011990 GO:0005515
Accr13g00803 706 SMART tpr_5 272 305 IPR019734 GO:0005515
Accr13g00803 706 SMART tpr_5 472 505 IPR019734 GO:0005515
Accr13g00803 706 SMART tpr_5 540 573 IPR019734 GO:0005515
Accr13g00803 706 SMART tpr_5 426 459 IPR019734 GO:0005515
Accr13g00803 706 SMART tpr_5 238 271 IPR019734 GO:0005515
Accr13g00803 706 SMART tpr_5 506 539 IPR019734 GO:0005515
Accr13g00803 706 ProSiteProfiles TPR repeat profile. 238 271 IPR019734 GO:0005515
Accr13g00803 706 MobiDBLite consensus disorder prediction 53 120 - -
Accr13g00803 706 Coils Coil 432 452 - -
Accr13g00803 706 CDD TRX_family 612 697 - -
Accr13g00803 706 Pfam Thioredoxin 613 690 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00803 Accr-Chr13 8983442 8986574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00803 239 312 U-box Gene Family AT3G07370 32.432 3.20e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00803 - - jre:108981778 843.188