LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr13g00783	ATGGCAAAACCACCTCCCAAGATCCCAAACACCAAACTTGGTTGGTCTGAACTTCCTTATTCTTCCCCACCGGAGATTCCTTCTGGCGCAAGTTTCTCACCGGATAATGCTGCCGCCTCCACTCAGGACCCTTTTTGGCCGGATGAATTCCACGATTTCTGGTTGGTGAGACGCCAAGGCCAATGCCCGTTGGTGAGCGATTACATTACTTTCCTCGAGGATCCCGAGATGCATGTTGCAAGGAATGTTCGACCAAGGTTTGAGGCTGACAATGAGTTTGATAAATTTGATGATGAGAAATTCATGACCATGTTTGATAACGATGAATCTGGGGCTGCTAATCCTCGAACCGTGTCCTCACCAAAATCTTCTAGCCCTTCTGATCATAAAAGCAACATTAAAGATGAGAAAGAAATCACGAACCAAGTCCAACAACAACAGAACCTGCAAAATCAGAACGAAGATCAACAACATCAGCATTTGAAAAATGAACCTGATGAGGTTGAAACTCAGATAGACAAACAGCAGAAAATACATCCTTCAAATAATTCATTAGCATCTTCTTCCTCTGGCAAGATCAGTGATCCTAAGAGGTTCAAAAGAATATTGGCAAATAGGAAATCTGCACAAAGATCACGAGTGAGAAAGCTGCAATATATAAACGAGCTAGAACGTAGTGTAACTTCATTACAGGCTGAAGTATCAGTAATGTCTCCAAGGGTTGCATTTTTAGATCGGCAACGCTTGCTTCTAAGTGTTGACAATGATGATCTTAAGCAACGAATCGCTGCCCTCGCCCAAGACAAGATCTTCAAAGATGCTCTTCAAGATGCACTCAGGAGGGAGATAGAGAGGCTACGGCAAGTGTGTCACCAACAAAAACTCAACAACATTGAAAATGTTGCAGGTTCAACATCCCCCTCACCAAATCCAAAATGTCGCGGTCAGGCTGAATCGGAACAGCTTCGCCTCAACGTCTGA	981	0.4383	MAKPPPKIPNTKLGWSELPYSSPPEIPSGASFSPDNAAASTQDPFWPDEFHDFWLVRRQGQCPLVSDYITFLEDPEMHVARNVRPRFEADNEFDKFDDEKFMTMFDNDESGAANPRTVSSPKSSSPSDHKSNIKDEKEITNQVQQQQNLQNQNEDQQHQHLKNEPDEVETQIDKQQKIHPSNNSLASSSSGKISDPKRFKRILANRKSAQRSRVRKLQYINELERSVTSLQAEVSVMSPRVAFLDRQRLLLSVDNDDLKQRIAALAQDKIFKDALQDALRREIERLRQVCHQQKLNNIENVAGSTSPSPNPKCRGQAESEQLRLNV	326

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr13g00783	326	SUPERFAMILY	Leucine zipper domain	197	251	IPR046347	GO:0003700\|GO:0006355
	Accr13g00783	326	SMART	brlzneu	193	257	IPR004827	GO:0003700\|GO:0006355
	Accr13g00783	326	Pfam	bZIP transcription factor	197	238	IPR004827	GO:0003700\|GO:0006355
	Accr13g00783	326	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	200	215	IPR004827	GO:0003700\|GO:0006355
	Accr13g00783	326	MobiDBLite	consensus disorder prediction	110	127	-	-
	Accr13g00783	326	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	195	247	IPR004827	GO:0003700\|GO:0006355
	Accr13g00783	326	Gene3D	-	196	269	-	-
	Accr13g00783	326	MobiDBLite	consensus disorder prediction	26	40	-	-
	Accr13g00783	326	MobiDBLite	consensus disorder prediction	300	326	-	-
	Accr13g00783	326	CDD	bZIP_plant_RF2	198	248	IPR044759	GO:0003700\|GO:0006355
	Accr13g00783	326	Coils	Coil	276	296	-	-
	Accr13g00783	326	FunFam	Transcription factor VIP1	196	267	-	-
	Accr13g00783	326	MobiDBLite	consensus disorder prediction	157	174	-	-
	Accr13g00783	326	Coils	Coil	139	164	-	-
	Accr13g00783	326	MobiDBLite	consensus disorder prediction	106	198	-	-
	Accr13g00783	326	MobiDBLite	consensus disorder prediction	1	43	-	-
	Accr13g00783	326	PANTHER	BASIC LEUCINE ZIPPER 34	4	308	-	-
	Accr13g00783	326	MobiDBLite	consensus disorder prediction	175	193	-	-
	Accr13g00783	326	MobiDBLite	consensus disorder prediction	138	156	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr13g00783	Accr-Chr13	8752303	8753811	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr13g00783	1	275	bZIP Transcription Factor Family	AT2G42380	43.945	1.55e-63	201

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Accr13g00783		bZIP_1	1.9e-08	CL0018

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr13g00783	-		-	pcin:129313713	359.377