Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00764 ATGCTCTTAGAGAAGAAGATGGACGACGGAGAAATCTCAAATATCAGTTTTCCTCAAAACCACCCACCAACCGCCGCATCATCAAACAATACCAATCCTCCTCCGATTCTCAAGAGAAAGAGAAACCTCCCAGGAAACCCTGATCCTGAAGCGGAAGTGATAGCACTATCGCCGAAGACTTTAATGGCGACGAACAGATTTCTGTGTGAGATTTGCGGGAAAGGGTTTCAGAGGGATCAAAATCTGCAACTTCATAGACGAGGACACAATCTTCCATGGAAGCTGAAGCAGAGGGCAAGCAAAGAAGTGAAAAAGAGAGTGTATGTGTGTCCAGAAAAAAGCTGCGTTCACAATCACCCATCAAGGGCTCTGGGAGATTTGACTGGCATCAAAAAACACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGTGAGAAATGCTCAAAGCGTTACGCTGTTCAGTCTGATTGGAAAGCACACTCCAAAACGTGCGGTACCAGGGAATACAAATGTGACTGTGGCACCATCTTTTCACGGAGGGATAGCTTCATAACACATAGGGCCTTCTGTGATGCCCTGGCAGAAGAGACAGCAAGAGTGAACGCAGCATCAAACATGAGCAACAACATAAGTTACAATAATATAATTGGAGCTGCTACTTCACTAGAACCAAACAACAACACCAATAATATGGCAACCCACTTTCCTTCAATCTTCAAGCCAATTTCAAATACCAATTCCGAGGAAGCAAATAATAATAACCAAACACCTCTTAGAGGATTATCCCTATGGATGGGTCATCATCATCACCAACAACCTGATCATCAAACAATAATGCCTAGTGACCACCATGGCCAGTTTGTTTCACAATCGCAGCAGCTAAATTGGGTGTTTGGAAACAAGCTTATTACAAGTTCTATTTCTTCTTCCTCTTGTCAAGAGCTAGCAAGCACGTCAATTGGAATGATAAGTGTTCCTTCCTTGTATAGCTCCCAACAACATCATCATCAGACATCGTTGGCAAACATGTCGGCGACGGCGCTGTTGCAAAAAGCTGCTCAGATAGGAGCAACCTCGACCACATGTGACCAGACATTTCTGGGGAGCCTAGGGTTGAAATGTAGCAGTCAAGGTGGTCATCAAGAAGAAGATGATCATGGGAGTAACAAGTATAATTATGGGATGTTCGGTTCGGGTTCGGTTATCACCAATGTTCGTGGTGGTGGTGGTGGAGGAAGCGATCAGACGACAGAGAACAACAACAACTCGGCAAGTGAAATGTCACAAATGCACCCAGCAAAACGCCCAAGGCAGGTATTACAACAACAGAATGAAGAAGGAGAAACTAGGGATTTCCTTGGTGTTGGTGGTAGTGTGCAAACCATTTGCCAGCCTTCATCAATAAATGGATGGGTCTGA 1422 0.4459 MLLEKKMDDGEISNISFPQNHPPTAASSNNTNPPPILKRKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRASKEVKKRVYVCPEKSCVHNHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAASNMSNNISYNNIIGAATSLEPNNNTNNMATHFPSIFKPISNTNSEEANNNNQTPLRGLSLWMGHHHHQQPDHQTIMPSDHHGQFVSQSQQLNWVFGNKLITSSISSSSCQELASTSIGMISVPSLYSSQQHHHQTSLANMSATALLQKAAQIGATSTTCDQTFLGSLGLKCSSQGGHQEEDDHGSNKYNYGMFGSGSVITNVRGGGGGGSDQTTENNNNSASEMSQMHPAKRPRQVLQQQNEEGETRDFLGVGGSVQTICQPSSINGWV 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00764 473 Gene3D Classic Zinc Finger 63 90 - -
Accr13g00764 473 MobiDBLite consensus disorder prediction 406 446 - -
Accr13g00764 473 SMART c2h2final6 143 163 IPR013087 -
Accr13g00764 473 SMART c2h2final6 67 89 IPR013087 -
Accr13g00764 473 SMART c2h2final6 108 138 IPR013087 -
Accr13g00764 473 MobiDBLite consensus disorder prediction 1 49 - -
Accr13g00764 473 SUPERFAMILY beta-beta-alpha zinc fingers 66 163 IPR036236 -
Accr13g00764 473 MobiDBLite consensus disorder prediction 13 36 - -
Accr13g00764 473 FunFam protein indeterminate-domain 12-like 46 114 - -
Accr13g00764 473 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 461 IPR031140 -
Accr13g00764 473 FunFam protein indeterminate-domain 5, chloroplastic-like 121 200 - -
Accr13g00764 473 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
Accr13g00764 473 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Accr13g00764 473 Gene3D Classic Zinc Finger 101 191 - -
Accr13g00764 473 MobiDBLite consensus disorder prediction 410 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00764 Accr-Chr13 8532668 8534939 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00764 34 473 IDZ Gene Family AT1G03840 53.830 4.85e-149 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr13g00764 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00764 K25870 - qsa:O6P43_028858 519.235