Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00753 ATGGCTTCGTTGTTCAAGGATTTGTCCAAGCTTTCAGCCTATCGAGATAGAAAATTTCCGGGAACACAAGAGGAATTTGAGCTCGCGCTCCTGACTTCAACGACTGTTTATGTGGGAAATATGTCGTTTTACACAACAGAAGAGCAAGTTTACGAACTTTTTTCTCGATCTGGAGAAATCAAGAAAATTATCATGGGATTGGATAAAAACTCCAAAACTCCCTGTGGCTTTTGTTTTGTTTTATATTACTCTCGAGAAGATACTGAAGATGCTGTCAAATACATAAGCGGCACAATACTTGATGATCGTCCTATCCGTGTAGATTTTGACTGGGGATTCCAGGATGGAAGACAATGGGGTCGTGGCCGTACTGGTGGTCAAGTGCGTGATGAATATCGGACTGATTATGATCCTGGTAGAGGTGGTTATGGAAAGTTAGTTCAGAAAGAGTTGGAGGCACAAAGGCAGCTTGTTGATTATGGTGCTGGTTCTTTGGGCTCTTTTCCACCAGTTTTGCCACCATCCTATGGCAGACATGGTGGTTCTCATCGGTATGGTAGAGATTACCATAGAAAGAGACATAGAGATGACGATCGCCATGCCTACGAGTCCTCAAAAAGATCTTCAGATCACGAATCTCGGAGGAACTCTGATCATGATTCTAGACCGGAAAAGAATCCACGATTTCGTGAGAGTGGTGATTCTGATGATGACGAGGAAGATGATAGAAAAAGAAGATCTTAG 744 0.4274 MASLFKDLSKLSAYRDRKFPGTQEEFELALLTSTTVYVGNMSFYTTEEQVYELFSRSGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRTGGQVRDEYRTDYDPGRGGYGKLVQKELEAQRQLVDYGAGSLGSFPPVLPPSYGRHGGSHRYGRDYHRKRHRDDDRHAYESSKRSSDHESRRNSDHDSRPEKNPRFRESGDSDDDEEDDRKRRS 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00753 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Accr13g00753 247 MobiDBLite consensus disorder prediction 121 143 - -
Accr13g00753 247 MobiDBLite consensus disorder prediction 124 138 - -
Accr13g00753 247 Gene3D - 6 150 IPR012677 -
Accr13g00753 247 SMART rrm1_1 35 108 IPR000504 GO:0003723
Accr13g00753 247 CDD RRM_NCBP2 36 113 IPR034148 -
Accr13g00753 247 MobiDBLite consensus disorder prediction 191 247 - -
Accr13g00753 247 MobiDBLite consensus disorder prediction 165 247 - -
Accr13g00753 247 SUPERFAMILY RNA-binding domain, RBD 30 144 IPR035979 GO:0003676
Accr13g00753 247 FunFam Nuclear cap-binding protein subunit 2 4 150 - -
Accr13g00753 247 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 2 154 IPR027157 GO:0000339|GO:0005846|GO:0045292
Accr13g00753 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00753 Accr-Chr13 8390124 8394042 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00753 35 109 Eukaryotic Initiation Factors Gene Family AT3G11400 32.000 3.07e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00753 K12883 - zju:107411315 393.66