Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00745 ATGAGCACTTCTGAATGCACAGAGCACAAGTTCTTTGATGAAACCCACCACCTTCTCTTCCCAAACAAACCAATCATCAGAGACATGGACAACTACATGCCACCCAGGAAACTCCTCACTCGCCTTGGCGCCGCCAAAACCACTCTCCACGACATCGCCTCCGATACGTTCAGGGAATCGCCGCAGTTTTCCTCTTCCGACGAGACCCTTCTCCGGAAATTCCTTCCCCACAACAACCTCGAACCCTCCGACGACGATGATTCCGACCCGTACTCCTCGGAACACTTCCGAATGTATGAGTTCAAGGTTCGCCGGTGCAATCGGAGCCGGAGCCATGACTGGACTGACTGTCCCTTCGCTCATCCCGGCGAAAAGGCTCGCCGGCGCGATCCCAGGAAGTATCATTATTCCGGCATCATCTGCCCCGAGTACCGCCGCAGCGGCGCATGCAAACGCGGCGATAGTTGTGAGTTTGCACACGGGGTGTTTGAATGTTGGCTTCACCCAGCGAGGTACAAAACAGAGGCTTGTAAGGATGGTAAGAATTGTAAGCGAAAGGTATGTTTCTTCGCTCACACACCTCGCCAACTGAGAATTTTGCCGTCGAATAATTGCTCAGCTTCTTCACCTGATCAAATCTCAGACAGTAATAAGAACAAATTCTTAAAATCCTCACTGAGATCAAATAATTGCTGTATGTTTTGTCACCGCTCTCCTAAGGCTAATAATTCTTCTCCGACCTCCACCCTCTTCGGGATGTCCCATTTTTCACCACCGTTGTCGCCGTCGTCCCCTGTTTCGCCGATCAATACAGGACACACTACAAATGGTTTATCTCCAATTTCTTGGTATAATGAAAGAATTAAGGGATCTGAGGTTTATAATAATGAGGGGATGATAATGAGCTACAGGGGTGCTCTCACTGAGTTGATGAGCTCCTTGGAGGTTCTGAATTTCAATGAAGCTTCGTCTTCTTCACCTGAAATAATCTCTGCAACTACCCCTAATAATCAGTCTCCAAATATGTACTGGCTTGATGTTTCAACAGCTCTATCTGCTTCAAGGAGATTTTCATCAACTGGAAAATTTTTGAACGAAAGCAGAATGGTTGATGATGATAATAAGAATGGGTCTTCATCAAGTGCAACTGATCCAGATCTGGGTTGGGTCAATGACCTGCTGATATAG 1188 0.4739 MSTSECTEHKFFDETHHLLFPNKPIIRDMDNYMPPRKLLTRLGAAKTTLHDIASDTFRESPQFSSSDETLLRKFLPHNNLEPSDDDDSDPYSSEHFRMYEFKVRRCNRSRSHDWTDCPFAHPGEKARRRDPRKYHYSGIICPEYRRSGACKRGDSCEFAHGVFECWLHPARYKTEACKDGKNCKRKVCFFAHTPRQLRILPSNNCSASSPDQISDSNKNKFLKSSLRSNNCCMFCHRSPKANNSSPTSTLFGMSHFSPPLSPSSPVSPINTGHTTNGLSPISWYNERIKGSEVYNNEGMIMSYRGALTELMSSLEVLNFNEASSSSPEIISATTPNNQSPNMYWLDVSTALSASRRFSSTGKFLNESRMVDDDNKNGSSSSATDPDLGWVNDLLI 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00745 395 SUPERFAMILY CCCH zinc finger 134 165 IPR036855 GO:0046872
Accr13g00745 395 FunFam Zinc finger CCCH domain-containing protein 66 93 162 - -
Accr13g00745 395 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 161 IPR000571 GO:0046872
Accr13g00745 395 PANTHER UNKEMPT FAMILY MEMBER 62 394 IPR045234 -
Accr13g00745 395 SMART c3hfinal6 135 162 IPR000571 GO:0046872
Accr13g00745 395 SMART c3hfinal6 171 194 IPR000571 GO:0046872
Accr13g00745 395 Gene3D - 137 199 - -
Accr13g00745 395 ProSiteProfiles Zinc finger C3H1-type profile. 136 163 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00745 Accr-Chr13 8250385 8251572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00745 85 263 C2H2 Transcription Factor Family AT5G12850 48.889 2.69e-52 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Accr13g00745 zf-CCCH 8.2e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00745 K23047 - qsa:O6P43_028831 398.667