Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00739 ATGCCTGCGCAGAAGCGGTCTCTGCCGGAGTCTGCGGACGACGGAGAGGTCTCAGAACTTAACAACCACCGCCATGCGAAGCAATCTCATCGGGACCGAGAGCTACAAGGCCAGGAAAAGAGGGCAGAGGAAGATGACCAAGGGGAGCTTGGTGAAGGGGAGGAAGAAGAAGGGCAGCAGAACGAGCAAGAGCAGGATAAGGAGGAGAAAGCAGAGGATTCTGAGGAAAGCCCATCTTCTGAACCCGAAGAGAAACCTGAATTTGTGTTTGTCGAACTTCTGGAAATACGTAAAGATGTCCAATGTCCAATTTGCCTTGGTATTATCAAGAAAACACGGACTGTCATGGAATGCTTGCACCGTTTTTGCAGGGAATGCATTGACAAGTCAATGAGACTAGGGAATAATGAATGCCCTGCTTGTCGCACACATTGTGCCAGTCGTCGTTCTTTGAGAGATGATCCAAACTATGATGCTTTAATTGCTGCTCTATATCCAGATATTGAGAAGTATGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGAACCGCAATAAGCAGATTCAAGCTTCGATTGCAAAAGTGGTTCAACGGCAATCTGAAGCACTGGTTAAGAGGCGTAATAAGGATACACCACCTGGTGCATTTGTCCCAAGGTCACAGCGCAATCATAGGAACGTTCAAACTAGGAGACAAAACCATGGAATTGATCAAGGATCAGAAGACAACGAAGAGGAAAATGAAAATAACGGAGAAAAAGACTCATCCTCCGCTGATGAGCGGAGTGCAGAACCAAAGAAAAAGCGAAAGAGAGGGACAAGAGTTCGCCCCTCCCAGCCTTCCTCATCAATGGCAAGCGCTGATGGTGGATTTATAGAAAGTGATGTTGATATCATGAGAGAAAACCGAGGACTTTCTTCAAGGCATCTGTCAAAACCTCAGAAGCTTACTTGGGGACGGGGTGGTTTTAGGAGTCACACTCGACATGGCAGTGGCAGTGGTAGCTCTAGCAAGAGTTCCCGTGTTAGTCGTGTGTCTAAGTTTGTTGATTATTTAAAAGGCTTAGAAGAAAACACAGATGAGTATGATATCCATCTTATGCTTGTTTCTTTGGACAAAGAAAGCATACCAAGTTTGCAGCAGCCACACCTTTGCTGTCGGCCAACTTTGTCCATCAAGCACCTTTGTGAATATATTGCTCATCAGACCGTGTTGGCAGCTGAAGAAGTTGAGATATTGGCAGTTAAAGGATGCTGCAGCATTATCTGTGATAAGTCAGTTTATGAGACTTCAACCTTGCTGAATGACGAGCTTACTACACTGATTGTGGATCCCTGCAAGGATGAACTGGAAACTTTGCAAGTACATGAAACCTTGGCAGGGCTCAAATCTAAATGCATATCTAAAATGGAGCACCTGATTCTGGCATTTAGGAGGAAGGAGAAAATATAG 1455 0.4529 MPAQKRSLPESADDGEVSELNNHRHAKQSHRDRELQGQEKRAEEDDQGELGEGEEEEGQQNEQEQDKEEKAEDSEESPSSEPEEKPEFVFVELLEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEEEELEFREEEKNRNKQIQASIAKVVQRQSEALVKRRNKDTPPGAFVPRSQRNHRNVQTRRQNHGIDQGSEDNEEENENNGEKDSSSADERSAEPKKKRKRGTRVRPSQPSSSMASADGGFIESDVDIMRENRGLSSRHLSKPQKLTWGRGGFRSHTRHGSGSGSSSKSSRVSRVSKFVDYLKGLEENTDEYDIHLMLVSLDKESIPSLQQPHLCCRPTLSIKHLCEYIAHQTVLAAEEVEILAVKGCCSIICDKSVYETSTLLNDELTTLIVDPCKDELETLQVHETLAGLKSKCISKMEHLILAFRRKEKI 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00739 484 MobiDBLite consensus disorder prediction 305 340 - -
Accr13g00739 484 Coils Coil 168 199 - -
Accr13g00739 484 MobiDBLite consensus disorder prediction 1 86 - -
Accr13g00739 484 PANTHER OS11G0578200 PROTEIN 1 483 IPR044592 -
Accr13g00739 484 MobiDBLite consensus disorder prediction 200 292 - -
Accr13g00739 484 MobiDBLite consensus disorder prediction 48 80 - -
Accr13g00739 484 MobiDBLite consensus disorder prediction 9 47 - -
Accr13g00739 484 SUPERFAMILY RING/U-box 89 156 - -
Accr13g00739 484 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 172 IPR013083 -
Accr13g00739 484 ProSiteProfiles Zinc finger RING-type profile. 102 142 IPR001841 -
Accr13g00739 484 SMART ring_2 102 141 IPR001841 -
Accr13g00739 484 ProSitePatterns Zinc finger RING-type signature. 118 127 IPR017907 -
Accr13g00739 484 Pfam Zinc finger, C3HC4 type (RING finger) 101 141 - -
Accr13g00739 484 CDD RING-HC_RING1-like 99 164 - -
Accr13g00739 484 MobiDBLite consensus disorder prediction 251 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00739 Accr-Chr13 8206980 8213143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00739 95 165 C3H Transcription Factor Family AT3G23060 35.135 4.20e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00739 K10695 - gmx:100776547 555.444