Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00736 ATGGTTGCGTTTTGGTGGTGGGCTGTTCTGTTGTTTATTCGTCCCGTGGCGGGTCTGAGACCACTGAGGGAGAGAACTCGGTCGTGGGGCGATGAGTGGCTAGTCACAAGAAAAGTGGAAAGTGAGCTAGGTCCATTTTCACAATGGAACATAACAGGAACATACAAAGGAACTTGGAAATTCTTAGATACCACCAATGGCTCTTCCAGATTTCCTGACATCAGAAAAACAAATGGCAATACTGTAATTGAATTAATTAGTACACCCACAAAAATAAATGGTGTGCATTATGTGCAGGGAGTAGTTATATTCCATGATGTGTTTGACAATGAGTACAATGTTGGCGGTGCTCAAATCAGAGTAGAAGGTGTATATATATGGCCTTTTAGACAGCTTCGAATGGTAGCCACCAGTAAAAAAGAGGGAGAGTTAAATCAGGGTGAAGATAATATTTTATCTAATCCATATCATCTGCTTGGAGTCTTCTCATCCCAAGTATTCCAAGAATCTTCACGAGATAAGAAGTGGAGAAGAAAGCATTCTCAAATATATGACGTGGAGAAACGATGCAATTTTGAAATTGCTGCACAAATTTCCCGACTGTCTTCATCAAAAAATGATGGGGATCAGGACCTTTTCCATCTTGAAGGGCTAACAGAGAGTCCCTCAACCGATGATGATGGGGACTGCTTCTCACCTTTACTACTAAATGCAACTTCAGTTAACATTGAGGTCTACTATAACAAAGCAGTGAACTACACATTGATGGTTACCTTTGTGTCTTTCTTGCAAGTTCTCTTATTGATTCGACAAATGGAGCATAGCAACACTCAATCTGGAGCTGCCAAGGTTTCAATTTTTATGATTGGCCAACAGGCAATCATGGATGCTTATCTATGCCTTTTACATCTGACTGCTGGGATACTAGTTGAGTCTTTGTTCAATGCTTTTGCAACTGCTGCTTTTTTCAAGTTTGTGGTCTTCTCAATATTTGAGATGAGATATCTCCTTGCCATATGGAAGGCAAGTAGGCCTTTCAACAATGGGGATGGTTGGGAAACAATGAGACGGGAGCTTTCAGTTTTATACAGTCGTTTCTATGGGATCCTGCTGGGTGGCATTCTGCTCATGTATGAGTTTCATAGTTATTTGAGACCTATTCTTCTTCTTATGTACTCCTTTTGGATACCTCAAATTATCACCAATGTTGTTCGTGATTCACGCAAACCGTTGCATCCTCATTACATCCTAGGGATAACCATCACTCGGCTAGCAATCCCATTATATATTTTCGGTTGCCCTAACAATTTCATGCGCATCGAACCCCACAAGAACTGGTGTATTTGTTTGGTTGTATTTGTTGGATTTCAAGCAGGAGTTCTCTTGCTTCAACACTACCTTGGATCCCGTTGGTTCATTCCTCGACAGATTCTGCCTGAGAAATACAGCTATTATAGGAGGCTTGATCAAGACAGAAGCCATGCTTCAGACTGTGTTATTTGCATGACGGCCATTGATTTTTCTCAGAGATCCAATGAATGCATGGTAACACCTTGCGATCATTTCTTCCACTCTGGCTGTTTGCAAAGATGGATGGATGTAAAGATGGAGTGTCCAACATGCCGGCGGCCGCTGCCTCCTGCCTAG 1647 0.4183 MVAFWWWAVLLFIRPVAGLRPLRERTRSWGDEWLVTRKVESELGPFSQWNITGTYKGTWKFLDTTNGSSRFPDIRKTNGNTVIELISTPTKINGVHYVQGVVIFHDVFDNEYNVGGAQIRVEGVYIWPFRQLRMVATSKKEGELNQGEDNILSNPYHLLGVFSSQVFQESSRDKKWRRKHSQIYDVEKRCNFEIAAQISRLSSSKNDGDQDLFHLEGLTESPSTDDDGDCFSPLLLNATSVNIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSIFMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPFNNGDGWETMRRELSVLYSRFYGILLGGILLMYEFHSYLRPILLLMYSFWIPQIITNVVRDSRKPLHPHYILGITITRLAIPLYIFGCPNNFMRIEPHKNWCICLVVFVGFQAGVLLLQHYLGSRWFIPRQILPEKYSYYRRLDQDRSHASDCVICMTAIDFSQRSNECMVTPCDHFFHSGCLQRWMDVKMECPTCRRPLPPA 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00736 548 PANTHER RING ZINC FINGER PROTEIN 117 547 - -
Accr13g00736 548 FunFam E3 ubiquitin-protein ligase, putative 484 548 - -
Accr13g00736 548 Pfam Ring finger domain 497 542 IPR001841 -
Accr13g00736 548 SUPERFAMILY RING/U-box 485 547 - -
Accr13g00736 548 ProSiteProfiles Zinc finger RING-type profile. 498 542 IPR001841 -
Accr13g00736 548 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 484 548 IPR013083 -
Accr13g00736 548 CDD RING-H2_TUL1-like 493 547 - -
Accr13g00736 548 SMART ringv_2 497 542 IPR011016 GO:0008270
Accr13g00736 548 SMART ring_2 498 541 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00736 Accr-Chr13 8158244 8166248 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00736 489 546 C3H Transcription Factor Family AT1G53010 36.667 4.65e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00736 K23788 - gmx:100785460 987.638