Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00723 ATGGGTTGCATATGTTCCAAGACATCGGCTGTAGAAGACAGCCGTGAAGATTTGACAAAGAAATCATTATCTAGCCAGAGAGGGTCAGAGCTGCGTGTTTCAAGGTTGAATTCCTCTAAAAGAAACGAGGGGATTTGGGAAACAGATAAGTTAGTTGGAAATGATGTGAAGATTTCATTGATTGACAAGAAAACCAATGGCTCATTTCAGTTGCGTGATGATCAAGTGGGGAATAAGGAAATAGAGAAGCCTGAATTAGCTGTCCTGAACAATCCTGGTCTTGGAAAGGTTCCAAAGGCTGTAGAAGGAGAGCAAGTTGCAGCAGGATGGCCCAGTTGGCTTTCTTCTGTTGCAGGTGAAGCTATCAACGGATGGATACCTCGAAGCGCCAATACTTTTGAGAGGTTAAATAGAATTGGCCAAGGAACTTACAGTACTGTTTATAAAGCTCGTGATGTGACTCACCAAAAAATTGTTGCTTTGAAGAGAGTTCGGTTTGATAATCTTGATCCTGAGAGTGTAAAGTTTATGGCTAGGGAAATTCTCCTTCTGCGTAGACTCGACCATCCGAATATAATCAAGTTGGAAGGCTTGATAACATCTCAGACCTCTCACAGCTTGTACCTAATTTTTGAGTATATGGAACATGATCTTTCTGGACTAGCATCACGTCCTGGCATCAAGTTTTCTGAACCACAGGTTAAATGCTATATGCAACAACTTCTTAGTGGATTGGATCATTGTCATAGTCGTGGTGTCCTCCATCGTGACATAAAGGGCTCAAATCTTCTCATTGACAACAATGGCATCTTAAAAATTGCAGATTTTGGGTTGGCAAGTTTCTTTGACCCCGATCATAGTGTTCCATTGACCAGTCGAGTAGTTACTCTCTGGTATAGACCTCCCGAACTTTTACTTGGAGCAACTCATTATGGAGTTGCGGTAGATTTATGGAGCTCTGGTTGCATACTTGGGGAACTATATACTGGCAGGCCTATATTGCCAGGAAAAACTGAGGTTGAGCAACTGCACAGGATTTTCAAGCTTTGTGGATCACCTTCTGAGGACTATTGGCTTAAAGAGCGATTGCCACATGCTGCAGTATTCAGGCCTCCACACCGGTACAGACGAAGTATTACTGAAACATTTAAAGAATATCCATCTGTTTCAGTGAGGCTTATAGAGACACTACTTTCTATAGATCCAGCACAACGAGGGACAGCAGCCAGTGCTCTAAAGAGTGAGTTCTTCACTACAGAGCCCTTTGCTTGTGATCCATCAAGTTTACCGAAGTATCCTCCCAGCAAAGAGATTGATTCTAAGTTACGTGATGAAGAAACCAGAAGGCAAGGAGCTATCGGAGGAAGGGAGCAGAAAGCTCGCTCAGGAGCTAGAAAAGAAAAGGAACCTGGGATGACTATTCTATCAAATCCCTATGTCGACCCACGCATGTCAACCCGGCAGGGACAACATTCCAATTCAAACAGCCAAAGTGAAGTGTTTCACCACCCTCACAGAGAACCTGTTTCTGGATTTTTGGTTTATCCCCCACAGAACCAGTCACATGTTAAAGATATGGAAAATAATTTCGGTGGGCATATTTACAAGAGGCCTTCACATTCAGGTCCACTTGTTCCGGGTATCCAATTATCAAGGGGCGGAAAGGAAGTTGACGAAGGGCCTCTTGGTTCTAACAGAATCAACTTGTCAAAACTATCTGGCTTAGTTTCATCGAGGACGACTTCATCTGAAGATCGAGAGAAAAAACCAGTTTCTCTGCTTCCTAGAAAAACAATTGAAGTTAAAAAACCTGTGGAGTCAACTAATAATGTATTAGAGTCAAGAAGGCATGATAAGAAACGCCACTCCCCACGAATTTTGGATTTCAATCAGATAGACAATGCAAGAGGCTCCACTCAAGAATTAACTCCGGGAGGCCGTGGGTACATGGAAAACAAGATTTATCTCTCTGGTCCTTTACTAGCATCTTCAAACATGGATCAGATGCTTAAAGAGCACGATCGAAAGATCCAAGAATTTTCAAGACGAGCACGAATTGACAAGTCAAGGGGTGGGAAATTTCGTGCACATAGAAAGTAG 2100 0.4276 MGCICSKTSAVEDSREDLTKKSLSSQRGSELRVSRLNSSKRNEGIWETDKLVGNDVKISLIDKKTNGSFQLRDDQVGNKEIEKPELAVLNNPGLGKVPKAVEGEQVAAGWPSWLSSVAGEAINGWIPRSANTFERLNRIGQGTYSTVYKARDVTHQKIVALKRVRFDNLDPESVKFMAREILLLRRLDHPNIIKLEGLITSQTSHSLYLIFEYMEHDLSGLASRPGIKFSEPQVKCYMQQLLSGLDHCHSRGVLHRDIKGSNLLIDNNGILKIADFGLASFFDPDHSVPLTSRVVTLWYRPPELLLGATHYGVAVDLWSSGCILGELYTGRPILPGKTEVEQLHRIFKLCGSPSEDYWLKERLPHAAVFRPPHRYRRSITETFKEYPSVSVRLIETLLSIDPAQRGTAASALKSEFFTTEPFACDPSSLPKYPPSKEIDSKLRDEETRRQGAIGGREQKARSGARKEKEPGMTILSNPYVDPRMSTRQGQHSNSNSQSEVFHHPHREPVSGFLVYPPQNQSHVKDMENNFGGHIYKRPSHSGPLVPGIQLSRGGKEVDEGPLGSNRINLSKLSGLVSSRTTSSEDREKKPVSLLPRKTIEVKKPVESTNNVLESRRHDKKRHSPRILDFNQIDNARGSTQELTPGGRGYMENKIYLSGPLLASSNMDQMLKEHDRKIQEFSRRARIDKSRGGKFRAHRK 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00723 699 Pfam Protein kinase domain 133 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr13g00723 699 MobiDBLite consensus disorder prediction 677 699 - -
Accr13g00723 699 MobiDBLite consensus disorder prediction 436 468 - -
Accr13g00723 699 Gene3D Phosphorylase Kinase; domain 1 120 215 - -
Accr13g00723 699 SMART serkin_6 133 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr13g00723 699 FunFam probable serine/threonine-protein kinase At1g54610 120 215 - -
Accr13g00723 699 FunFam probable serine/threonine-protein kinase At1g54610 216 457 - -
Accr13g00723 699 Gene3D Transferase(Phosphotransferase) domain 1 216 454 - -
Accr13g00723 699 MobiDBLite consensus disorder prediction 425 502 - -
Accr13g00723 699 MobiDBLite consensus disorder prediction 16 35 - -
Accr13g00723 699 SUPERFAMILY Protein kinase-like (PK-like) 126 423 IPR011009 -
Accr13g00723 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672|GO:0006468
Accr13g00723 699 ProSitePatterns Protein kinases ATP-binding region signature. 139 162 IPR017441 GO:0005524
Accr13g00723 699 ProSiteProfiles Protein kinase domain profile. 133 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr13g00723 699 PANTHER CELL DIVISION PROTEIN KINASE 131 422 - -
Accr13g00723 699 MobiDBLite consensus disorder prediction 479 499 - -
Accr13g00723 699 CDD STKc_CDK9_like 133 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00723 Accr-Chr13 8029190 8033407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00723 125 458 Core Cell Cycle Gene Families AT5G10270 48.571 2.85e-113 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Accr13g00723 Pkinase 9.4e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00723 - - gmx:100814156 961.444