Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00713 ATGGCTGCGTTAGACCAGTATTTTGATGAGGCCGTGTCCCGAACCGATTCATATGGTGAAGAAAACTCTTATTCTGATAGGACTGATTCTAATGGATTTGACTGCAATATCTGCTTGGACTGTGTGCAAGATCCAGTGGTCACCCTTTGTGGTCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTCCAGTTCCACAACCTTTCCAACGAAGAATACGGCGAACAGCAGACTCCACAGTGTCCGGTATGCAAAACCGAAGTTTCCCAATCCTCCCTCGTTCCACTCTACGGCAGAGGCCAAACCACAGAACCATCTTCCAAAGGCAAGTCCCACCATATGGGGAATATGATCCCACAAAGACCACTTGGACCTTTGTCATCGGTTTATCGTCGAAGACCATTTAATAATGCTACTACTAGTGCAGTTCCACAACCCTCTTCCCAATTTTATAATGGTCACTATCCTTATTATCATCATCCTCAACAGTTCAACTCCAACCCAAGCAGCTCCAACTCAGGAATGCTAGGCATGGATGGTGCACTGAGAAACGCTTTCGACTCAAGAATTGGCATGTTTGGTGAGATGATATACGCAAGAGTATTTGGGAACCAAGTGACAAACGTATACACGTACCCGAATACGTATAATCTAGCTTGGAACAGTAATCCAAGGATCAGAAGGCACTTGATGCAAACTGATAAGCAACTGAATAGAATCTGCTTTTTTCTGCTTTGTTCTATAGTTTTGTGTCTTCTCTTATTCTGA 768 0.4414 MAALDQYFDEAVSRTDSYGEENSYSDRTDSNGFDCNICLDCVQDPVVTLCGHLYCWPCIYKWLQFHNLSNEEYGEQQTPQCPVCKTEVSQSSLVPLYGRGQTTEPSSKGKSHHMGNMIPQRPLGPLSSVYRRRPFNNATTSAVPQPSSQFYNGHYPYYHHPQQFNSNPSSSNSGMLGMDGALRNAFDSRIGMFGEMIYARVFGNQVTNVYTYPNTYNLAWNSNPRIRRHLMQTDKQLNRICFFLLCSIVLCLLLF 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00713 255 SMART ring_2 35 84 IPR001841 -
Accr13g00713 255 Pfam Zinc finger, C3HC4 type (RING finger) 35 67 - -
Accr13g00713 255 ProSitePatterns Zinc finger RING-type signature. 50 59 IPR017907 -
Accr13g00713 255 MobiDBLite consensus disorder prediction 97 122 - -
Accr13g00713 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 117 IPR013083 -
Accr13g00713 255 ProSiteProfiles Zinc finger RING-type profile. 35 85 IPR001841 -
Accr13g00713 255 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 21 252 IPR045103 GO:0005783|GO:0006511|GO:0061630
Accr13g00713 255 SUPERFAMILY RING/U-box 24 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00713 Accr-Chr13 7898978 7899745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00713 28 255 C3H Transcription Factor Family AT4G28270 37.339 2.47e-42 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00713 K10666 - gmx:100785491 286.96