Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00643 ATGATGAAAAGCCCTTGCTATGACAAAAATGGATTAAAGAGGGGTGTGTGGAGTAAGGAAGAGGATGAAATGTTAAGAGCATATGTTGAGAGATACGGCCATAGTAATTGGCGTCAACTTCCCAAACACGCAGGTTTATCAAGGTGTGGAAAGAGTTGCAGACTTCGATGGCTAAATTACCTTCGCCCGGGCGTAAAGCGTGGAAGTTACACCCAAGAAGAAGACCAACTCATCATCAATTTACATCAACAGCTTGGAAATAAATGGTCTTCCATTGCCAAAAGATTGCCAGGGAGAAGTGACAACGAAATTAAAAACCATTGGCATAGCCACCTGAAGAAGCTCTTGGAGCGCAACCATGCGGAAAAATCTGAGTTGAAAACGAAGGCTAGTGATAATTGTGAAGGAGAAGCAACAAAGTATTTGGAACCTGAAAACACTCTGCTTGGTCTTGCGGCTGCTTCCTCCAGTGATATTATCTCATCAGAAAATTCTCCACACATCTACAATTCATCTTCAAACTTTTCCTTCGGGGGAGAAAGTGTTGTTAATGCCTCTGCATGCGAAATATTTGAAGAATTCGGCGATTTTTGGACCCAACCGTTTCTCCCAGAAAATATATATGACCCAAATAACTATAATAGTCTGAACTATGCAGCAAATGAAGCAGACGTGGATGAATATTCCTCATACATCTTCAATAATGCTGATTTTTTGTGCCACGAGATGCAAGAATTCCCAGAAGATCCTAAAATGGATATATAA 765 0.4078 MMKSPCYDKNGLKRGVWSKEEDEMLRAYVERYGHSNWRQLPKHAGLSRCGKSCRLRWLNYLRPGVKRGSYTQEEDQLIINLHQQLGNKWSSIAKRLPGRSDNEIKNHWHSHLKKLLERNHAEKSELKTKASDNCEGEATKYLEPENTLLGLAAASSSDIISSENSPHIYNSSSNFSFGGESVVNASACEIFEEFGDFWTQPFLPENIYDPNNYNSLNYAANEADVDEYSSYIFNNADFLCHEMQEFPEDPKMDI 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00643 254 CDD SANT 69 112 IPR001005 -
Accr13g00643 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Accr13g00643 254 SMART sant 66 114 IPR001005 -
Accr13g00643 254 SMART sant 13 63 IPR001005 -
Accr13g00643 254 Gene3D - 68 141 - -
Accr13g00643 254 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 176 - -
Accr13g00643 254 Gene3D - 14 66 - -
Accr13g00643 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Accr13g00643 254 CDD SANT 17 61 IPR001005 -
Accr13g00643 254 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Accr13g00643 254 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Accr13g00643 254 FunFam Transcription factor RAX3 6 67 - -
Accr13g00643 254 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Accr13g00643 254 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Accr13g00643 254 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00643 Accr-Chr13 7193616 7194743 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00643 1 119 MYB Transcription Factor Family AT2G31180 66.387 9.33e-59 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr13g00643 Myb_DNA-binding 4.8e-15 CL0123