Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00642 ATGGTGAGAGGTCCTTCTTCTTCCTTCGACGCCAATGGAGTTAAGAAAGGTGCATGGAGCGAAGAAGAAGACCAGAAGCTCGTTTCTTTTATTCAGACCCATGGCCATCCTAATTGGCGCAAACTTCCCAAGTTAGCAGGGTTGGCAAGATGTGGAAAGAGCTGCAGGCTTCGATGGATGAACTACCTGCGACCAAATCTGAAATGTGGCAACTATACTGCACAAGAGGAGGAGATCATCCTCAAACTACACGAACAACATGGAAATAAGTGGTCCCTGATTGCTGAGAAGTTGCCTGGAAGAACAGACAACCATATAAAGAATCTTTGGCACAGCCAACTCAAGAGGCGGTCGAGGGACAGAGAAAAGAGTAGTTCTTCTGAGGTGAAAGGCAAGAAGTCAGGCCGTCAAAATAATATGACAAAGTATTCGTCAGAAGCTGATACTGTGAAAGTTGTGAATGGGTTGAGTAACATATTAGAAAGCTCATCACCGGAGTTTATGGAGACGACGACGTCGACCCTGGCCTCGCAAGACAACTACTCTCCTTCCTTGACGACGTCGACCCTGGCCTCGCAAGACAACTACTCTCCTTCCTCGCCTTCCATTGATACAGAATCTACCCCCACCAAAAATTCGCCAGAAGAATATAATAGCGGGGCTTTGCGGAAAGAAGTGTATAAATTCCAAGAATTTAGCGGCGATTTTTGA 711 0.4627 MVRGPSSSFDANGVKKGAWSEEEDQKLVSFIQTHGHPNWRKLPKLAGLARCGKSCRLRWMNYLRPNLKCGNYTAQEEEIILKLHEQHGNKWSLIAEKLPGRTDNHIKNLWHSQLKRRSRDREKSSSSEVKGKKSGRQNNMTKYSSEADTVKVVNGLSNILESSSPEFMETTTSTLASQDNYSPSLTTSTLASQDNYSPSSPSIDTESTPTKNSPEEYNSGALRKEVYKFQEFSGDF 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00642 236 MobiDBLite consensus disorder prediction 163 222 - -
Accr13g00642 236 Gene3D - 8 69 - -
Accr13g00642 236 MobiDBLite consensus disorder prediction 163 217 - -
Accr13g00642 236 MobiDBLite consensus disorder prediction 105 146 - -
Accr13g00642 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 118 IPR017930 -
Accr13g00642 236 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Accr13g00642 236 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Accr13g00642 236 CDD SANT 71 111 IPR001005 -
Accr13g00642 236 Gene3D - 70 145 - -
Accr13g00642 236 MobiDBLite consensus disorder prediction 131 146 - -
Accr13g00642 236 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Accr13g00642 236 Pfam Myb-like DNA-binding domain 70 112 IPR001005 -
Accr13g00642 236 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Accr13g00642 236 MobiDBLite consensus disorder prediction 105 130 - -
Accr13g00642 236 CDD SANT 18 63 IPR001005 -
Accr13g00642 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 67 IPR017930 -
Accr13g00642 236 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 202 - -
Accr13g00642 236 FunFam MYB-related transcription factor 15 68 - -
Accr13g00642 236 SMART sant 68 116 IPR001005 -
Accr13g00642 236 SMART sant 15 65 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00642 Accr-Chr13 7159716 7163203 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00642 13 117 MYB Transcription Factor Family AT1G06180 67.619 2.03e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr13g00642 Myb_DNA-binding 5.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00642 K09422 - gmx:100782270 201.83