Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00638 ATGATGAGAAGCCCTTACTATGACAAAAATGGATTAAAGAGGGGTGCGTGGAGTAAGGAAGAGGATGAAATGTTAAGAGCATATGTTGAGAGATACGGCCACAGTAATTGGCGTCAACTTCCCAAACATGCAGGTTTATCAAGGTGTGGAAAGAGTTGCAGACTCCGATGGCTAAATTACCTTCGCCCGGGCGTAAAGCGAGGAAATTACACCCAAGAAGAAGACCAACTCATCATCAATTTACATCAACAGCTTGGAAATAAATGGTCTTCCATTGCCAAAAGATTGCCAGGGAGAAGTGACAACGAAATTAAGAACCATTGGCATAGCCACCTAAAGAAGCTCTTGGAGCGCAACCATGCGGAAAAATCTGAGTTGAAAACGAAGGCTAGTGATAATTGTGAAGGAGAAGCAACAAAGTATTTGGAACCTGAAAACACTCTGCTTGGTTTTGCTGCTGCTTCCTCCAGTAATATTATCTCATCAGAAAATTCTCCACACATCTACAATTCATCTTCAAACTTTTCCTTCGGGGGAGAAAGTGTTGCTAATGCCTCTGCATGCGAAATATTTGAAGAATTCGGCGATTTTTGGACCAAACCATTTCTCCCAGAAAATATATATGACCAAAATAACTATAAGAGTCTGAACTATGCAGTAAATGAAGCAGACGTGCGTGAATATTCCTCATACATCTTCGATAATGCTGATTTTTTGTGCCACGTGATGCAAGAATTCCCAGAAGATCCTAAAATGGATATATAA 765 0.4052 MMRSPYYDKNGLKRGAWSKEEDEMLRAYVERYGHSNWRQLPKHAGLSRCGKSCRLRWLNYLRPGVKRGNYTQEEDQLIINLHQQLGNKWSSIAKRLPGRSDNEIKNHWHSHLKKLLERNHAEKSELKTKASDNCEGEATKYLEPENTLLGFAAASSSNIISSENSPHIYNSSSNFSFGGESVANASACEIFEEFGDFWTKPFLPENIYDQNNYKSLNYAVNEADVREYSSYIFDNADFLCHVMQEFPEDPKMDI 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00638 254 Gene3D - 14 66 - -
Accr13g00638 254 CDD SANT 69 112 IPR001005 -
Accr13g00638 254 CDD SANT 16 61 IPR001005 -
Accr13g00638 254 FunFam MYB-related transcription factor 13 66 - -
Accr13g00638 254 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Accr13g00638 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Accr13g00638 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Accr13g00638 254 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Accr13g00638 254 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Accr13g00638 254 Gene3D - 69 141 - -
Accr13g00638 254 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Accr13g00638 254 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Accr13g00638 254 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 181 - -
Accr13g00638 254 SMART sant 13 63 IPR001005 -
Accr13g00638 254 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00638 Accr-Chr13 7042923 7044106 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00638 1 119 MYB Transcription Factor Family AT2G31180 67.227 1.07e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr13g00638 Myb_DNA-binding 2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00638 K09422 - tcc:18608585 241.891