Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00625 ATGCGATTAGCTTTCCTTCCATCGTCGCCGAAAAAAAGTATCAGAATGAGAATAATGATAGCCCTTGTTCTGTTTTATGCTTTTTTGCTATGTCTTCCCTTATCCTGCTTAGCTAGGCCTAGGGATACTTTGAAGATGGGTGAAAAGCTTCTTGACGGTGAAGATGGCAGTGGCAACCTCGTGACAACAGGACAAAAACTACTGCAGTTTGAACTGGGTTTCTTTTCGCCTTCTGGAAGCCCGAAGAGATACCTAGGAATTTGGTATCATGAGAAAGATCCACAAACAGTTGTCTGGGTTGCTAACAGAGACAAACCCATTCCTTCAAAAACTGCAAGTTTTCAAATTTCGCAGGATGGAAAACTCGTTGTGAATGATACAGACGGAACAGTCTATTGGTCTTGCACACCTGCACAAGCATCTTCTCTCACACACCTCACAGTGAAGCTTATGGATTCTGGAAACTTAATTCTAGGAGACGATCAATTACAGTCTAACTACTGGCAAAGCTTCCAACACCCCACGGACACATTTTTGCCGGGCATGAAAATGGATAAAAATGTAGTCTTGAATTCTTGGGTTGGCTATGATGATCCCAGCAAGGGGAACTACACGTTTGCGGGTGGAAAAACAGGGGATAGCAACTACACAATCTACATCAACCAGAAGGAAGTTTACTGGGCAGGTGAAACACCCCAAGATTTCAGCTCAGAAGGAAAAATACTTTGGTTGCTGACAAACTTCTCCCAAAGACCTCTTACTTACAAGAACAAAAGCATGTCAGGAATTCCACACCTTTCTGATTTTGAGTCTACAAGGCTAGTGATGAATCATACAGGATACGTAGAGCTTTGGCGCTGGGATATGATCAGCGGATGGACAAACAACAGCTGGAAAGAACCAGATAACATTTGCAAGATATATAACTACTGTGGGAACTTTGGAAGTTGCAATATCAATAATTCGCCACCCTGTAGGTGTTTGCCTGGATTCGCTTCGAAGTCACCGGGGAAGAATCCGAATCCTTCCTCTAAATATGGAGGGTGTTTCAGAAAAACAACATCATGTGGGCAAAACATAACAACATTCATTGACTTGAAGAGGGTGAAAGTGAGAAGGCCAGACAAGAAAGTCGACGCAGCGAACGAAACAGAGTGCCGATCTCTGTGCCTCAATGGGACTGGGTGCCGCAATTGCACTGCTTATTCATATGATAAATCAGCTGTCTATAGTAAGACGTTCGTACCGTGTTCTATTTGGACTTCTGACTTACCTACCATTCAAGAAGAGATTGATTCCGGCGTTAATATTTCTGTCCCGGTAAATAAACCAGATATAGAGCCAACTCCAAGAACGTGCCAACCTTGTGGTGCATTCACAATTCCGTATCCGCTGAGCACTGAACCTAGTTGTGGTGATCCCAATTACTCCAATTTTAAATGCGACTTGGCAACCGGGAAGGTTAGTTTCACTGTGGGAGAAGTGAGTTATAGAGTTACTAATATTGATCCAGACAAGAGATCCTTCTCTATTCAAATTGATGGGTCGGAGGATTGCGCTGCAATCAATCTCGAGCGTCTTGGTCTGGCATTTCGTGTGACTCAAGAGTGCGATGAAGTTGAAGGACAGACACTAAAGATTAATTGGTCTCCCCCAGATGAACCTCCCTGTAGTAACTCCATAGACTGCAAGGGCTGGTCTCATTCAACTTGCACAGCAGCTAGAAATGGAAATGGAAATAGAAGATGCCTCTGCAATACAAAATATCAATGGAATGGCGGCAATTTAAGCTGTACTCCAGAGCCTCCAGGAGGAAACAACGCTAAAGTTTTGATATTAACGGTAATATTTTCAAGCTTGATTTTCTTGGCCTGCATTGTAACTTCTGCTTACATTTGGAGAAGAAAAGTAACCTTTAAGCAAGAAAATGGACAAGATCAAAGAACGAGAGAGAGCCTACATGACAGTGAGAGATATATAAAAGATCTCATGGACGCGGAGAGGTTAGAGGAAAATGACAGTGAAGTGATAGAGGTGCCTTATTTGGATTTTAATAGCATCCTATTAGCCACAGATAACTTCTCAGATGCAAACAAGCTTGGACGTGGGGGTTATGGACCTGTCTACAAGGGCAAGCTTCATGGAGGTCAAGATATTGCAGTAAAGAGGCTTTCAAGTGTATCTTCACAAGGATTGAAGGAATTCAAGAATGAAGTTGTTTTGATATCCAAACTTCAACATAGAAATCTTGTTAGACTTCGGGGCTATTGCATTACAGGAGAAGAAAAAATATTACTTTATGAATATATGAAAAACAAGAGCTTAGACACATTCTTATTTGATCGTACACAAAGAGTGATTTTAGATTGGCCAATGCGATTTGAAATAATTCTAGGAATTGCGAGAGGGATGTTATATCTTCATCAAGACTCTAGATTGAGAGTGATTCATAGAGATTTGAAAACTAGTAATATCCTCTTGGATGAGGAGATGCAGCCAAAAATTTCAGACTTTGGACTTGCAAAAATATTTGGAGGCAAGGAGATTGAAGCTAACACTGAGAGAATAGTCGGAACTTATGGATACATGTCTCCAGAGTATGCATTGGATGGATTTTTCTCAATCAAATCAGATGTTTTTAGTTTTGGTGTTGTGATGCTTGAAATTATTAGTGGAAAAAAGAACACTGGATTCTTTCAATCCAAGCAGGCTTCCAGCCTTCTGGGTTATGCATGGAGGCTATGGACAGAGAATAACTTGTTGGATTTAATGGATCGATCTTTGACTGAAAGCTGCAATGCAAATCAGTTCATTAAGTGTGCACAAGTTAGTCTATTGTGCGTACAAGATGAACCAGGAGACAGGCCTACCATGTCGCAGGTAGTGATAATGCTTGAAAGTGAGACTACAAGCCTCCCAACTCCAAAGCAACCAACCTTTTTTATGACAAGAGACAGAGGCCTTTCTATCTCTGGTTCTTCTTCTAGCATGCCTGGAGGAATTCTTCCAACTGATAGTTGCTATCAAGAAGGTCGGTAG 3039 0.4153 MRLAFLPSSPKKSIRMRIMIALVLFYAFLLCLPLSCLARPRDTLKMGEKLLDGEDGSGNLVTTGQKLLQFELGFFSPSGSPKRYLGIWYHEKDPQTVVWVANRDKPIPSKTASFQISQDGKLVVNDTDGTVYWSCTPAQASSLTHLTVKLMDSGNLILGDDQLQSNYWQSFQHPTDTFLPGMKMDKNVVLNSWVGYDDPSKGNYTFAGGKTGDSNYTIYINQKEVYWAGETPQDFSSEGKILWLLTNFSQRPLTYKNKSMSGIPHLSDFESTRLVMNHTGYVELWRWDMISGWTNNSWKEPDNICKIYNYCGNFGSCNINNSPPCRCLPGFASKSPGKNPNPSSKYGGCFRKTTSCGQNITTFIDLKRVKVRRPDKKVDAANETECRSLCLNGTGCRNCTAYSYDKSAVYSKTFVPCSIWTSDLPTIQEEIDSGVNISVPVNKPDIEPTPRTCQPCGAFTIPYPLSTEPSCGDPNYSNFKCDLATGKVSFTVGEVSYRVTNIDPDKRSFSIQIDGSEDCAAINLERLGLAFRVTQECDEVEGQTLKINWSPPDEPPCSNSIDCKGWSHSTCTAARNGNGNRRCLCNTKYQWNGGNLSCTPEPPGGNNAKVLILTVIFSSLIFLACIVTSAYIWRRKVTFKQENGQDQRTRESLHDSERYIKDLMDAERLEENDSEVIEVPYLDFNSILLATDNFSDANKLGRGGYGPVYKGKLHGGQDIAVKRLSSVSSQGLKEFKNEVVLISKLQHRNLVRLRGYCITGEEKILLYEYMKNKSLDTFLFDRTQRVILDWPMRFEIILGIARGMLYLHQDSRLRVIHRDLKTSNILLDEEMQPKISDFGLAKIFGGKEIEANTERIVGTYGYMSPEYALDGFFSIKSDVFSFGVVMLEIISGKKNTGFFQSKQASSLLGYAWRLWTENNLLDLMDRSLTESCNANQFIKCAQVSLLCVQDEPGDRPTMSQVVIMLESETTSLPTPKQPTFFMTRDRGLSISGSSSSMPGGILPTDSCYQEGR 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00625 1012 CDD STKc_IRAK 700 966 - -
Accr13g00625 1012 SMART serkin_6 694 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr13g00625 1012 MobiDBLite consensus disorder prediction 990 1012 - -
Accr13g00625 1012 CDD B_lectin 59 174 IPR001480 -
Accr13g00625 1012 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 659 769 - -
Accr13g00625 1012 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 141 989 - -
Accr13g00625 1012 Gene3D Transferase(Phosphotransferase) domain 1 770 977 - -
Accr13g00625 1012 SUPERFAMILY alpha-D-mannose-specific plant lectins 96 231 IPR036426 -
Accr13g00625 1012 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 770 973 - -
Accr13g00625 1012 Gene3D - 38 173 IPR036426 -
Accr13g00625 1012 ProSiteProfiles Protein kinase domain profile. 694 980 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr13g00625 1012 Pfam D-mannose binding lectin 96 188 IPR001480 -
Accr13g00625 1012 SMART blect_4 52 174 IPR001480 -
Accr13g00625 1012 Pfam PAN-like domain 356 424 IPR003609 -
Accr13g00625 1012 Pfam S-locus glycoprotein domain 266 334 IPR000858 GO:0048544
Accr13g00625 1012 Gene3D Phosphorylase Kinase; domain 1 657 769 - -
Accr13g00625 1012 ProSiteProfiles PAN/Apple domain profile. 356 453 IPR003609 -
Accr13g00625 1012 SUPERFAMILY Protein kinase-like (PK-like) 676 988 IPR011009 -
Accr13g00625 1012 Pfam Protein tyrosine and serine/threonine kinase 698 963 IPR001245 GO:0004672|GO:0006468
Accr13g00625 1012 ProSiteProfiles Bulb-type lectin domain profile. 52 171 IPR001480 -
Accr13g00625 1012 SMART ntp_6 358 441 IPR003609 -
Accr13g00625 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 815 827 IPR008271 GO:0004672|GO:0006468
Accr13g00625 1012 FunFam Receptor-like serine/threonine-protein kinase SD1-8 36 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00625 Accr-Chr13 6775813 6780254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00625 669 982 Receptor kinase-like Gene Family AT4G23150 56.369 2.17e-122 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Accr13g00625 PK_Tyr_Ser-Thr 3.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00625 - - pcin:129313312 1070.84