Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00585 ATGTGCAAGGGTGCAGAAGAGGAAAAGCACGGTGGTTTCTGCAGGAGCCATCTCCGCCCAGCTGAAGACGACGACGCCACGTCACATGGCGAGACCAGAGGTTCAATACCATGTGAGCTATGTGGGTTAAGGGCATCGCTGTATTGCCTAGCTGATAAGGCGTATCTATGTAGAAAATGTGATAAATGGGTTCATAAAGCAAATTTCTTGGCCTTTAGGCACGTAAGGTGCTTTCTCTGCAATACGTGCCAGAATCTTTCGCGACGATATCTTATCGGAGCCTCCGTCGAAGTTACTGTTCCGACCAATATCGGAAGGTTGGAGGGCCGCGACAGAAACTGTTCTAGCTGA 351 0.4957 MCKGAEEEKHGGFCRSHLRPAEDDDATSHGETRGSIPCELCGLRASLYCLADKAYLCRKCDKWVHKANFLAFRHVRCFLCNTCQNLSRRYLIGASVEVTVPTNIGRLEGRDRNCSS 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00585 116 CDD Bbox1_BBX-like 37 79 - -
Accr13g00585 116 MobiDBLite consensus disorder prediction 15 35 - -
Accr13g00585 116 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 37 86 - -
Accr13g00585 116 SMART bboxneu5 33 79 IPR000315 GO:0008270
Accr13g00585 116 Pfam B-box zinc finger 37 74 IPR000315 GO:0008270
Accr13g00585 116 MobiDBLite consensus disorder prediction 15 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00585 Accr-Chr13 6325239 6325589 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00585 1 113 C2C2-CO-like Transcription Factor Family AT3G21890 45.082 5.40e-24 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Accr13g00585 zf-B_box 3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00585 - - pcin:129313228 194.126