Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00584 ATGGAACCTCTATGTGAACTTTGTGGGGTGGTAAGAGCAATTGTGTATTGCGAGCCAGATTCTGCTCGTCTCTGTTTTAATTGCGATGATCGTGTACACTCTGCAAATGCTCTGTCACGCCGTCATCAACGTTCATTACTATGTAATAAGTGCAATTCTCAGCCTGCAACTATCCGTTGCATATTTGACAAAATGTCTGTATGTCAATCTTGTAACTTGGGCCCATTTAGCTGTTCAAGTTTGGGCCATAGGTATCACGAATTGAATTCTTACAGTGGTTGTCTCAACGAAACAAGGTCGTTTGCTTTTGCTCCTTCGTCTGGTGGTTTTGGTGTCACTAGTTCTCCATCATTTGACACATTTCTTCCTAGAAATGACAAATACTCCAACAAGTGTTTGGATCAACCAGATGATGACGGTGCCTCCTCGAATTTGGTGACAGGTAAGGTGAGTGAAATAGAACCATGTGTCAAATATGATCCTTGGACGGGACAATCTTCTAACCTTGTGCTGCCAAACACAAATTTCTTGTCATCGTGCAAAGATCAACCTTTTTCATTTCCTCTTGACTTACATCTGTCAAAGGGATGTCCTAATTTAAAGGATCCTGGGTCTGTTAGTGGTGATGATCTCTGTGGAGGTATCAACATACAGAATAGTTCATTATGTTTTGAAGGTGATGATGAAATACTTGATCGCAAAAAAGAAGCCACCAGATACCATCTTGAGAATGAAGAAATTGACTATTCATTAATGGAAAAGAGCATATCAGTGCCAAAACCCAACGGTCTTATTGAGAATGCCTTAGAGGCATCTTCATTATCAGTTCAACAGGATTGTGTAGGCTTTCAATCATCCAGTGCTAGCGAGTCAGTTAACCTGGGTCACAGCATCAACAGTAATGCAAATCCTATACCCATGAATCTGAGCTGCAACCAAAATGTCAATCCAGGATATCCTCATGGTCAAGCGCATCCAAGCATATCAGTCTCATTATCAAACATTAGTGGTGAAATTAGTAAAACTGTCCCTGATCATCAAGATTGTGGATTACCGCCAGCATTCCTGGCATGTGTTAGTCAACGAAATTTTGGGTCTCCGTGCCCACAGGCAAGGGACAAGGCTAAAAGGAGATACAAGGAGAAAAAGAAAAAAAGGGAGTTTATTAAACAAATAAGATATGCATCTCGAAAGGCTAGAGCTGATACTAGAAGACGGGTGAAAGGTAGATTTGTGAAAGCTGGTGAAGCTTACGATTATGATCCTCTGGTCAATGAGAACACCCAAGCAGATTGCCATACTAGAAGACGGGTGAAAGGTAGATTTGTGAAAGCTGGTGAAGCTTACGATTATGATCCTCTGGTCAATGAGAACACCCAAGCAGATTGCCGGCAATCACAGTCTTCTCTCTTGTCATCTGATTCTGATTGGTAA 1434 0.4142 MEPLCELCGVVRAIVYCEPDSARLCFNCDDRVHSANALSRRHQRSLLCNKCNSQPATIRCIFDKMSVCQSCNLGPFSCSSLGHRYHELNSYSGCLNETRSFAFAPSSGGFGVTSSPSFDTFLPRNDKYSNKCLDQPDDDGASSNLVTGKVSEIEPCVKYDPWTGQSSNLVLPNTNFLSSCKDQPFSFPLDLHLSKGCPNLKDPGSVSGDDLCGGINIQNSSLCFEGDDEILDRKKEATRYHLENEEIDYSLMEKSISVPKPNGLIENALEASSLSVQQDCVGFQSSSASESVNLGHSINSNANPIPMNLSCNQNVNPGYPHGQAHPSISVSLSNISGEISKTVPDHQDCGLPPAFLACVSQRNFGSPCPQARDKAKRRYKEKKKKREFIKQIRYASRKARADTRRRVKGRFVKAGEAYDYDPLVNENTQADCHTRRRVKGRFVKAGEAYDYDPLVNENTQADCRQSQSSLLSSDSDW 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00584 477 SMART bboxneu5 1 47 IPR000315 GO:0008270
Accr13g00584 477 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Accr13g00584 477 ProSiteProfiles CCT domain profile. 372 414 IPR010402 GO:0005515
Accr13g00584 477 CDD Bbox1_BBX-like 4 47 - -
Accr13g00584 477 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 417 - -
Accr13g00584 477 Pfam CCT motif 372 414 IPR010402 GO:0005515
Accr13g00584 477 Coils Coil 372 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00584 Accr-Chr13 6320582 6322912 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00584 1 422 C2C2-CO-like Transcription Factor Family AT3G21880 37.355 1.70e-72 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Accr13g00584 CCT 4.2e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00584 - - qsa:O6P43_028700 397.897