Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00571 ATGCCAGCCGGGATTATGATTCCGGCTATGCCCTCCTTGATCGGAAGGAACAACAACGTTGGCGGTGGTTTTGGATCATCCTCAGGCCTTTCTCTTAGTCAGAAAATGTTCCAGCAGCCAAACATGATGGATGGCCAGCTCCTGCCAGCACTGGACATGGCTCCTAACACATCGGAGAGTGACATCCCGAGAATCCGAGACGACGATTTCGACACCGCCACCAAGTCCGGAAGCGAAAATCAGGAAAACGGCGCCTCCGGTGACGACCAAGACCCACGCCCCAAGAAGAAACGTTACCACCGCCACACCCAGCACCAGATCCAGGAAATGGAAGCTTTCTTCAAAGAGTGCCCTCACCCCGATGACAAGCAAAGGAAGGAGCTTAGTCGTGAATTAGGGTTAGAGCCATTGCAGGTCAAGTTCTGGTTCCAAAACAAGCGCACCCAGATGAAGAACCAACATGAGAGGCATGAGAACTCGCACCTAAGAGCCGACAACGAAAAGCTTCGTGCCGATAACATGAGGTACAGAGAAGCTCTTAGCAATGCATCTTGTCCTAACTGTGGTGGACCGACCGCTATAGGAGAAATGTCCTTCGATGAACATCATTTGAGAATCGAAAATGCCCGCCTAAGAGAAGAGATTGATAGAATTTCAGCGATTGCTGCCAAGTACGTAGGGAAGCCAGTGGTGAACTATCCGCTACTTTCTCCCTCTTCGGTTCCACCTCGTCCTTTAGAGCTCGGTGTTGGCAGTGGCTATGGAGGACAGGCTGGGATTGGTGGCAGTGGGGACATGTACGGCAGCGGTGCCGGAGATCTTTTGAGGTCGATAAGCGGGCTCACCGAAGCCGATAAGCCGATGATCATAGAGCTTGCAGTTGCGGCCATGGAAGAACTGGTGAGAATGGCTCAGATGGGAGAGCCTCTTTGGATAACCACCCTCGACGGGTCCACCACTGTGCTCAATGAAGACGAGTACATGAGATCTTTTCCTCGTGGAATTGGCCCTAAGCCTACTGGCCTGAAATGCGAAGCTTCTCGAGAAACTGCTCTAGTCATCATGAATCACGTCAACCTTGTCGAGATTCTCATGGACGTGAACCAGTGGTCAACAGTGTTCTCTGGTATAGTGTCAAGAGCAATGACTATGGAAGTTCTGTCAACGGGGGTGGCTGGGAACTACAACGGTGCTTTGCAAGTGATGACAGCAGAGTTACAAGTGCCTTCACCATTAGTGCCAACTCGAGAGAGTTATTTCGTGAGGTATTGTAAGCAGCACGCTGACGGGACATGGGCAGTGGTGGATGTGTCTCTGGACCATCTCAGCACCGCTCCTGTCAAATGTAGAAGACGACCTTCTGGTTGCTTAATCCAAGAAATGCCCAATGGCTATTCCAAGGTGACGTGGATTGAACATGTAGAAGTGGATGATAGAGGTGTCCATAGTCTATACAAGCAGCTTGTTAGTTCAGGCCATGCATTTGGTGCAAAGCGATGGGTTGCCGCCTTAGATCGACAGTGTGAAAGGCTTGCTAGCGCCATGGCTTCCAACATTCCCACTGGTGATGTTGGAGTGATAACAAACCAAGACGGGAGGAGGAGCATGTTGAAGCTAGCGGAGAGAATGGTGATAAGCTTCTGTGCGGGAGTGAGCGCTTCCACTGCTCACACATGGACAACACTCTCTGGAACCGGGGCGGATGACGTACGGGTCATGACCCGAAAGAGTGTGGACGACCCGGGAAGACCTCCTGGTATTGTTCTCAGTGCTGCAACCTCTTTCTGGCTCCCAGTTCCCCCCAAGCGAGTCTTCGATTTCCTCCGCGATGAAAACTCCAGAAGTGAGTGGGATATTCTTTCCAACGGTGGCGCGGTGCAAGAAATGGCACACATAGCTAACGGACGTGATACAGGGAATTGTGTGTCCCTGCTCAGAGTGAATAGTGCAAATTCGAGCCAAAGCAATATGTTGATACTGCAAGAGAGCTGCACAGACTCAACGGGCTCTTTTGTGATATATGCACCTGTAGATATAGTAGCCATGAACGTGGTTCTGAATGGAGGGGATCCTGATTACGTGGCACTTCTTCCTTCGGGTTTTGCTATCCTACCCGATGGTACCACAGCTCATGGTGGTGGCATTGGTGAAACAGGCCACGGTGGATCGCTCTTGACCGTTGCTTTTCAAATCTTGGTTGATTCTGTGCCCACTGCTAAGCTCTCTCTTGGATCTGTTGCCACCGTCAATAACCTTATTGCCTGCACTGTGGAGAGAATTAAGGCTTCATTATCTTGTGAAGCTCCTTGA 2310 0.5082 MPAGIMIPAMPSLIGRNNNVGGGFGSSSGLSLSQKMFQQPNMMDGQLLPALDMAPNTSESDIPRIRDDDFDTATKSGSENQENGASGDDQDPRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKNQHERHENSHLRADNEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRIENARLREEIDRISAIAAKYVGKPVVNYPLLSPSSVPPRPLELGVGSGYGGQAGIGGSGDMYGSGAGDLLRSISGLTEADKPMIIELAVAAMEELVRMAQMGEPLWITTLDGSTTVLNEDEYMRSFPRGIGPKPTGLKCEASRETALVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTMEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHADGTWAVVDVSLDHLSTAPVKCRRRPSGCLIQEMPNGYSKVTWIEHVEVDDRGVHSLYKQLVSSGHAFGAKRWVAALDRQCERLASAMASNIPTGDVGVITNQDGRRSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRSEWDILSNGGAVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTAHGGGIGETGHGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCEAP 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00571 769 CDD START_ArGLABRA2_like 286 509 - -
Accr13g00571 769 MobiDBLite consensus disorder prediction 61 75 - -
Accr13g00571 769 CDD homeodomain 96 154 IPR001356 GO:0003677
Accr13g00571 769 SMART START_1 291 510 IPR002913 GO:0008289
Accr13g00571 769 FunFam Homeobox-leucine zipper protein HDG1 81 169 - -
Accr13g00571 769 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 93 764 IPR042160 -
Accr13g00571 769 FunFam Homeobox-leucine zipper protein GLABRA 2 291 509 - -
Accr13g00571 769 SUPERFAMILY Bet v1-like 283 512 - -
Accr13g00571 769 Coils Coil 159 179 - -
Accr13g00571 769 Pfam Homeodomain 96 152 IPR001356 GO:0003677
Accr13g00571 769 SUPERFAMILY Bet v1-like 530 761 - -
Accr13g00571 769 MobiDBLite consensus disorder prediction 52 104 - -
Accr13g00571 769 Gene3D - 81 170 - -
Accr13g00571 769 SMART HOX_1 94 157 IPR001356 GO:0003677
Accr13g00571 769 ProSitePatterns 'Homeobox' domain signature. 128 151 IPR017970 GO:0000981|GO:0006355
Accr13g00571 769 Pfam START domain 292 510 IPR002913 GO:0008289
Accr13g00571 769 Gene3D - 359 509 IPR023393 -
Accr13g00571 769 ProSiteProfiles START domain profile. 282 513 IPR002913 GO:0008289
Accr13g00571 769 ProSiteProfiles 'Homeobox' domain profile. 93 153 IPR001356 GO:0003677
Accr13g00571 769 SUPERFAMILY Homeodomain-like 88 159 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00571 Accr-Chr13 6174637 6178452 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00571 65 767 Homeobox Transcription Factor Family AT1G05230 81.895 0.0 1161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Accr13g00571 START 4.3e-58 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00571 K09338 - gmx:100809556 1281.16