Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00570 ATGCCAGCCGGGATTATGATTCCGGCTATGCCCTCCTTGATCGGAAGGAACAACAACGTTGGCGGTGGTTTTGGATCATCCTCAGGCCTTTCTCTTAGTCAGCAGCCAAACATGATGGATGGCCAGCTCCTGCCAGCACTGGACATGGCTCCTAACACATCGGAGAGTGACATCCCGAGAATCCGAGACGACGATTTCGACACCGCCACCAAGTCCGGAAGCGAAAATCAGGAAAACGGCGCCTCCGGTGACGACCAAGACCCACGCCCCAAGAAGAAACGTTACCACCGCCACACCCAGCACCAGATCCAGGAAATGGAAGCTTTCTTCAAAGAGTGCCCTCACCCCGATGACAAGCAAAGGAAGGAGCTTAGTCGTGAATTAGGGTTAGAGCCATTGCAGGTCAAGTTCTGGTTCCAAAACAAGCGCACCCAGATGAAGAACCAACATGAGAGGCATGAGAACTCGCACCTAAGAGCCGACAACGAAAAGCTTCGTGCCGATAACATGAGGTACAGAGAAGCTCTTAGCAATGCATCTTGTCCTAACTGTGGTGGACCGACCGCTATAGGAGAAATGTCCTTCGATGAACATCATTTGAGAATCGAAAATGCCCGCCTAAGAGAAGAGATTGATAGAATTTCAGCGATTGCTGCCAAGTACGTAGGGAAGCCAGTGGTGAACTATCCGCTACTTTCTCCCTCTTCGGTTCCACCTCGTCCTTTAGAGCTCGGTGTTGGCAGTGGCTATGGAGGACAGGCTGGGATTGGTGGCAGTGGGGACATGTACGGCAGCGGTGCCGGAGATCTTTTGAGGTCGATAAGCGGGCTCACCGAAGCCGATAAGCCGATGATCATAGAGCTTGCAGTTGCGGCCATGGAAGAACTGGTGAGAATGGCTCAGATGGGAGAGCCTCTTTGGATAACCACCCTCGACGGGTCCACCACTGTGCTCAATGAAGACGAGTACATGAGATCTTTTCCTCGTGGAATTGGCCCTAAGCCTACTGGCCTGAAATGCGAAGCTTCTCGAGAAACTGCTCTAGTCATCATGAATCACGTCAACCTTGTCGAGATTCTCATGGACGTGAACCAGTGGTCAACAGTGTTCTCTGGTATAGTGTCAAGAGCAATGACTATGGAAGTTCTGTCAACGGGGGTGGCTGGGAACTACAACGGTGCTTTGCAAGTGATGACAGCAGAGTTACAAGTGCCTTCACCATTAGTGCCAACTCGAGAGAGTTATTTCGTGAGGTATTGTAAGCAGCACGCTGACGGGACATGGGCAGTGGTGGATGTGTCTCTGGACCATCTCAGCACCGCTCCTGTCAAATGTAGAAGACGACCTTCTGGTTGCTTAATCCAAGAAATGCCCAATGGCTATTCCAAGGTGACGTGGATTGAACATGTAGAAGTGGATGATAGAGGTGTCCATAGTCTATACAAGCAGCTTGTTAGTTCAGGCCATGCATTTGGTGCAAAGCGATGGGTTGCCGCCTTAGATCGACAGTGTGAAAGGCTTGCTAGCGCCATGGCTTCCAACATTCCCACTGGTGATGTTGGAGTGATAACAAACCAAGACGGGAGGAGGAGCATGTTGAAGCTAGCGGAGAGAATGGTGATAAGCTTCTGTGCGGGAGTGAGCGCTTCCACTGCTCACACATGGACAACACTCTCTGGAACCGGGGCGGATGACGTACGGGTCATGACCCGAAAGAGTGTGGACGACCCGGGAAGACCTCCTGGTATTGTTCTCAGTGCTGCAACCTCTTTCTGGCTCCCAGTTCCCCCCAAGCGAGTCTTCGATTTCCTCCGCGATGAAAACTCCAGAAGTGAGTGGGATATTCTTTCCAACGGTGGCGCGGTGCAAGAAATGGCACACATAGCTAACGGACGTGATACAGGGAATTGTGTGTCCCTGCTCAGAGTGAATAGTGCAAATTCGAGCCAAAGCAATATGTTGATACTGCAAGAGAGCTGCACAGACTCAACGGGCTCTTTTGTGATATATGCACCTGTAGATATAGTAGCCATGAACGTGGTTCTGAATGGAGGGGATCCTGATTACGTGGCACTTCTTCCTTCGGGTTTTGCTATCCTACCCGATGGTACCACAGCTCATGGTGGTGGCATTGGTGAAACAGGCCACGGTGGATCGCTCTTGACCGTTGCTTTTCAAATCTTGGTTGATTCTGTGCCCACTGCTAAGCTCTCTCTTGGATCTGTTGCCACCGTCAATAACCTTATTGCCTGCACTGTGGAGAGAATTAAGGCTTCATTATCTTGTGAAGCTCCTTGA 2298 0.5091 MPAGIMIPAMPSLIGRNNNVGGGFGSSSGLSLSQQPNMMDGQLLPALDMAPNTSESDIPRIRDDDFDTATKSGSENQENGASGDDQDPRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKNQHERHENSHLRADNEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRIENARLREEIDRISAIAAKYVGKPVVNYPLLSPSSVPPRPLELGVGSGYGGQAGIGGSGDMYGSGAGDLLRSISGLTEADKPMIIELAVAAMEELVRMAQMGEPLWITTLDGSTTVLNEDEYMRSFPRGIGPKPTGLKCEASRETALVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTMEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHADGTWAVVDVSLDHLSTAPVKCRRRPSGCLIQEMPNGYSKVTWIEHVEVDDRGVHSLYKQLVSSGHAFGAKRWVAALDRQCERLASAMASNIPTGDVGVITNQDGRRSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRSEWDILSNGGAVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTAHGGGIGETGHGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCEAP 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00570 765 ProSitePatterns 'Homeobox' domain signature. 124 147 IPR017970 GO:0000981|GO:0006355
Accr13g00570 765 CDD START_ArGLABRA2_like 282 505 - -
Accr13g00570 765 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 89 760 IPR042160 -
Accr13g00570 765 ProSiteProfiles START domain profile. 278 509 IPR002913 GO:0008289
Accr13g00570 765 ProSiteProfiles 'Homeobox' domain profile. 89 149 IPR001356 GO:0003677
Accr13g00570 765 MobiDBLite consensus disorder prediction 57 71 - -
Accr13g00570 765 CDD homeodomain 92 150 IPR001356 GO:0003677
Accr13g00570 765 SUPERFAMILY Bet v1-like 526 757 - -
Accr13g00570 765 SUPERFAMILY Bet v1-like 279 508 - -
Accr13g00570 765 Gene3D - 355 505 IPR023393 -
Accr13g00570 765 Pfam Homeodomain 92 148 IPR001356 GO:0003677
Accr13g00570 765 MobiDBLite consensus disorder prediction 48 100 - -
Accr13g00570 765 SMART HOX_1 90 153 IPR001356 GO:0003677
Accr13g00570 765 SUPERFAMILY Homeodomain-like 84 155 IPR009057 -
Accr13g00570 765 SMART START_1 287 506 IPR002913 GO:0008289
Accr13g00570 765 Coils Coil 155 175 - -
Accr13g00570 765 FunFam Homeobox-leucine zipper protein HDG1 77 165 - -
Accr13g00570 765 Pfam START domain 288 506 IPR002913 GO:0008289
Accr13g00570 765 Gene3D - 77 166 - -
Accr13g00570 765 FunFam Homeobox-leucine zipper protein GLABRA 2 287 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00570 Accr-Chr13 6174637 6178452 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00570 61 763 Homeobox Transcription Factor Family AT1G05230 81.895 0.0 1161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Accr13g00570 START 4.3e-58 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00570 K09338 - gmx:100797992 1281.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g03262 1 69272161 69275879 Accr13g00570 13 6174637 6178452 CCT
Accr13g00570 13 6174637 6178452 Accr13g00570 13 6174637 6178452 ECH