Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00566 ATGGCTATGGTGAGGTTACTGTTCATCCTGTTTTCATGCCTGTCGATTTCCACAGAAGTGGTGGCTAGAACCGGAAATACCATCACAAACAAGACTAATGTTCCTGCGAGGCCACGCGTTGTGAGAGTCGGAGTACTGTTTACTCTCAATTCGTACATTGGAAGATCGGTAAAACCTGCAATTTTTGCTGCCCTCGATGATGTTAATAATGATACAACCATTCTTACTGGCATTAAAATGGAAGTTATTTTAGTTGATACAAATTGCAGCGGCTTTATTGGCACACTGGAAGCTCTGCAGTTCATGGAGAATGAAGTGGTTGCTGCTATTGGTCCACAGTCATCCAGAATAGCTCATGTGATATCTCATGTTGTTAATGAACTCCATGTGCCTCTTTTGTCATTTGGGGCTACAGACCCTACTCTTTCTTCTCTACAGTACACGTATTTTGTCCGCACTACCCACAGTGACTATTTTATGATGAACGCAGTTGCAGACGTGATTGACTACTTTGGTTGGAAGGAGGTGATTGCCATCTATGTGGATGATGATAATGGAAGAGGTGGAATTACAGCTTTAGGTGATGCACTTACAAAGAAGCGTACCAAGATCTCTTATAAGGCTGCCTTTGTCGTTGGAGCCTCTACAAGCGATATCACTATATTGTTAAACTCGATAAACCTAATGGAATCACGAGTCTATGTTCTCCATGTTAACCCTGATACTGGTTTGTCCATTTTCTCTCTTGCAAAGAAACTTGGTATGGTAGGCAATGGTTATGTTTGGATTGCTACAGATTGGCTTTCTTCGGTTCTAGATGCAATAGAACCAACTGATCCTGACACAATGAATCTCTTACAAGGGGTTATTGCCCTACGCCGTCATACTCCTGACACTGATCTCAAGAAGAGGTTTATCTCTAGGCTAAAAAATAGTAAAAACAAGGAGACTACAGGCATTAATTCCTTTGCATTATATGCATATGATTCAATTTGGTTAGCAGCACGTGCTCTTGATGCATTTCTTAGTGAAGGCGGAAATATATCTTTTGGTAGTGACCCCAAATTGAACAACACAAATGGAAGCTCGTTGCATTTTACATCACTTCGTTCTTTTGAAAGTGGCCCACAGTTTCTTGAGAAAGTCCTGTCAATGAACTTCACTGGTTTGACTGGTCAAATTCAGTTTGATGAGGGCAAGAATTTAATTCGTCCAGCATATGATATACTAAACATTGAAGGTGGAACTAGCCGTAGAATTGGTTATTGGACTAATTACTCTGGGCTGTCAATTGTAGCACCTGAAATTTTATATATAAAACCACCCAACATTTCATCTAGCAATCATCTTTCCAGTGTAATATGGCCAGGAGAGACTACAACAATACCCCGGGGATGGGTCTTCCCCAACAATGGAAAGCCTCTGCGAATTGCAGTACCAAACGGAGTAAGCTATCTGGACGTTGTTTCCAAAAGCAACAACCCCCCAGGAGTAAAAGGTTATTGCATTGACATCTTTGAAGCAGCCATAAACCTGTTGCCATATCCCGTCCCACGACAATATATATTATATGGAGATGGTCATACAAATCCCAGCTACGATGAAATCACGAATGAAGTTGCACATGGGAATTTTGATGCATTTGTTGGAGATGTAACAATTGTCACAAATAGGACAAGGGTTGTGGATTTTACTCAACCTTACACGGAATCAGGGTTGGTTGTAGTTGTTCCAGTTAAGGAGGTGAAGTCAAGCCCTTGGTCATTTCTAAAGCCGTTCACTACGCAAATGTGGTGTGTCACTGGTGCCTTCTTTCTCTCTGTGGGAGCTGTGATATGGATTCTTGAGCACCGGCTCAATCATGAGTTCCGTGGAGAAAATACTGTGAGCACCTTGGGGAGGATGGTGCTATTGATATGGCTTTTTGTGGTGTTAATTATCAATTCAAGTTACACTGCTAGCTTGACATCGATCCTCACAGTACAACAACTAACATCTCAAATTGAAGGAATTGACAGCTTGATTTCGAGTAATCAACCTATTGGAGTTCAAAATGGGTCATTTGTAGCAGATTATCTTACAAGTGAGCTAAATATAGCTAAATCAAGGATAGTGGATCTGAAAAGCGAGCAGGACTTTATCAATGCCCTTGATCGTGGACCGCAGGGTGGAGGGGTGGCGGCAATTGTTGAGGAGCTTCCATATATGGAGATTTTAATGTCAAAAACTAATTGTAAATTCAGAACTGTAGGCCAAGAGTACACTAAAAGTGGATGGGGATTTGCATTCCAAAGGGACTCTCCCCTTGCTGTGGACTTGTCAACCGCCATTCTTCAACTCTCAGAGAACGGAGACTTGCAAAGGATCCATGACAAGTGGTTCAAGACATTAAGCTGTTCTGCACAAGCCAATGATTTTGATTCAAACCAGCTCTCTCTCAGCAGCTTCTGGGGCCTCTTTCTCATTTGTGGGATTGCATGCTTCCTTGCTCTAGTTACATTTTTTGTCAGGGTGTTCCTTCAATATAAGAAATATATCCCTGATAGTGAGGAGGGTGAAGAAGATGGAGTGCGCGTTATGACACCTGTCAGTGCTAGAAGGACATTCAGATCCACCGCTAGCTTCAAGGACTTGATTGGTTTTGTAGATAGAAAGGAGTCTGAAATAAAGGAGATATTGAGGGATAAGCGTAAGAAACGACAACGCAGTAGGAGTTTAGATCGACACTTCAATTATTCAAACAGCTAA 2748 0.4178 MAMVRLLFILFSCLSISTEVVARTGNTITNKTNVPARPRVVRVGVLFTLNSYIGRSVKPAIFAALDDVNNDTTILTGIKMEVILVDTNCSGFIGTLEALQFMENEVVAAIGPQSSRIAHVISHVVNELHVPLLSFGATDPTLSSLQYTYFVRTTHSDYFMMNAVADVIDYFGWKEVIAIYVDDDNGRGGITALGDALTKKRTKISYKAAFVVGASTSDITILLNSINLMESRVYVLHVNPDTGLSIFSLAKKLGMVGNGYVWIATDWLSSVLDAIEPTDPDTMNLLQGVIALRRHTPDTDLKKRFISRLKNSKNKETTGINSFALYAYDSIWLAARALDAFLSEGGNISFGSDPKLNNTNGSSLHFTSLRSFESGPQFLEKVLSMNFTGLTGQIQFDEGKNLIRPAYDILNIEGGTSRRIGYWTNYSGLSIVAPEILYIKPPNISSSNHLSSVIWPGETTTIPRGWVFPNNGKPLRIAVPNGVSYLDVVSKSNNPPGVKGYCIDIFEAAINLLPYPVPRQYILYGDGHTNPSYDEITNEVAHGNFDAFVGDVTIVTNRTRVVDFTQPYTESGLVVVVPVKEVKSSPWSFLKPFTTQMWCVTGAFFLSVGAVIWILEHRLNHEFRGENTVSTLGRMVLLIWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSNQPIGVQNGSFVADYLTSELNIAKSRIVDLKSEQDFINALDRGPQGGGVAAIVEELPYMEILMSKTNCKFRTVGQEYTKSGWGFAFQRDSPLAVDLSTAILQLSENGDLQRIHDKWFKTLSCSAQANDFDSNQLSLSSFWGLFLICGIACFLALVTFFVRVFLQYKKYIPDSEEGEEDGVRVMTPVSARRTFRSTASFKDLIGFVDRKESEIKEILRDKRKKRQRSRSLDRHFNYSNS 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00566 915 CDD PBP1_GABAb_receptor_plant 42 433 IPR044440 -
Accr13g00566 915 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 327 339 - -
Accr13g00566 915 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 114 142 - -
Accr13g00566 915 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 54 70 - -
Accr13g00566 915 FunFam Glutamate receptor 156 321 - -
Accr13g00566 915 PIRSF IGluLR_plant 1 914 IPR017103 -
Accr13g00566 915 SUPERFAMILY Periplasmic binding protein-like I 36 467 IPR028082 -
Accr13g00566 915 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 41 870 IPR015683 -
Accr13g00566 915 FunFam Glutamate receptor 690 798 - -
Accr13g00566 915 CDD GluR_Plant 473 794 - -
Accr13g00566 915 Gene3D - 60 404 - -
Accr13g00566 915 SUPERFAMILY Periplasmic binding protein-like II 451 795 - -
Accr13g00566 915 FunFam Glutamate receptor 470 586 - -
Accr13g00566 915 Pfam Ligand-gated ion channel 796 827 IPR001320 GO:0015276|GO:0016020
Accr13g00566 915 Gene3D - 723 801 - -
Accr13g00566 915 Pfam Bacterial extracellular solute-binding proteins, family 3 530 795 IPR001638 -
Accr13g00566 915 Gene3D - 629 692 - -
Accr13g00566 915 Gene3D - 586 628 - -
Accr13g00566 915 Gene3D - 470 585 - -
Accr13g00566 915 Pfam Receptor family ligand binding region 57 413 IPR001828 -
Accr13g00566 915 Coils Coil 882 902 - -
Accr13g00566 915 Gene3D - 156 429 - -
Accr13g00566 915 SMART GluR_14 476 796 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00566 Accr-Chr13 6153274 6158856 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00566 37 761 Ion Channels AT1G05200 63.904 0.0 1018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00566 K05387 - qsa:O6P43_000581 1266.91