Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00565 ATGGCTACTGTGAGGTTACTGTTCATCCTGTTTTCATGCCTGTGGATTTCCACAGAAGTGGTGGCTAGAACCGGAAATACCATCACAAACAAGACTAATGTTCCTGTGAGGCCACGCGTTGTGAGAGTCGGAGTACTGTTTACTCTCAATTCGTACATTGGAAGATCGGCAAAACCTGCAATTTTTGCTGCCCTCGATGATGTTAATAATGATACAACCATTCTCCCTGGCATTAAAATGGAAGTTATTTTAGTTGATACAAATTGCAGCGGCTTTATCGGCACACGGGAAGCTCTGCAGTTCACGAAGAATGAAGTGGTTGCTGCTATTGGTCCACAGTCATCCAGAGTAGCTCATGTGATATCTGATGTTGTTAATGAACTCCATGTGCCTGTCCTGTCATTTGGGGCTACAGACCCTACTCTTTCTTCTCTGCAGTACACATATTTTGTCCGCACAACCCACAGTGACTATTTTATGATGAACGCAGTGGCAGACGTCATTGACTACTTTGGTTGGAAGGAGGTGATTGCCATCTATGTGGATGATGATAATGGAAGAGGTGGGATTACAGCCCTAGGTGATGCACTTGCAAAGAAGCGTTCTAAGATCTCTTATAAGGCTGCCTTTGCCGTTGGAGCCTCTACAAGCGATATCAGTATATTGTTAAATGCGGTAAACCTAATGGAATCGCGGGTCTATGTTCTCCATGTTAACCCTGACACGGGTTTGTCCATTTTTTCTCTTGCAAAGAAACTTGGTATGATGGGCAATGGTTATGTTTGGATTGCTACAGATTGGCTTCCTTCGGTTCTAGATGCAATAGAACCAGCTGATCCTGACACAATGAATCTCTTACAAGGGGTCATTGCCCTACGTCGTCATACTCCCGACACTGATCTTAAAAAGAGGTTTCTCTCTAGGATGAAAAACAGTAAAAATAAGGAGACTATAGGCCTTAATTCATTTGCATTATACGCATATGATTCAATTTGGTTAGCAGCACGTGCTCTTGATGCATTTCTTAATGAAGGCGGAAATATATCTTTTGGTAGTGACCCCAAATTGCACGACACAAATCGAAGCGCATTGCAATTTACATCATTTCGTTCTTTTGAAAGTGGCCCACAATTTCTCAAGAAAGTCCTGGCAACGAACTTCACTGGTCTAAGTGGTCAAATTCAGTTTGATGGAGACAAGAATTTAATCCATCCAGCATATGATATCGTAAACATTGATGGAACTAGCCGTAGAATTGGTTATTGGACTAATTACTCTGGCCTGTCAGTTGTAGCACCCGAAATTTCATATACAAAACCACCCAACATTTCATCTAGCAATCAACATCTTTCTCGTGTGATATGGCCAGGAGAGACTACAACAAAACCCCGGGGATGGGTGTTTCCCAACAATGGAAAGCCTCTGCGAATTGCAGTACCAAACCGAGTAAGCTATCTGGACTTTGCGTCCAAAAGCAAGAGCCCCCCAGGAGTAAAAGGTTATTGCATTGACGTCTTTGAAGCAGCCATAAACCTGCTGCCATATCCCGTCCCACGACAATATATATTATATGGAGATGGTCATACAAATCCCAGCTACAGTGAAATCACAGATGAAGTTGCACATGGGAATTTTGATGCGGTTGTTGGAGATATAACAATTGTCACTAGCAGGATTAGGGTTGTGGATTTTACTCAACCGTACATGGAATCAGGGTTGGTTGTAGTTGTTCCAGTTAAGGAGGTGAAGTCAAGCCCTTGGTCATTTCTCCAACCGTTCACTGTGCAAATGTGGTGTGTCACCGGTGCCTTGTTTCTCTTTGTGGGAGTTGTGGTATGGATTCTTGAGCACCGCATCAATGATGAGTTCCGTGGTCCTAAACGCCGACAACTTATGACCATTTTTTGTTTTACCTTCTCTACATTGTTTTCCGCACAACGAGAAAATACTGTGAGCGCTGGGGGGAGGACGGTGTTACTGATATGGGCTTTTGTGGTGTTAATCATCAATTCAAGTTACACTGCTAACTTGACGTCGATCCTCACAGTACAACAACTAACATCTCACATTGAAGGAATTGACAACTTGATTTCAAGTAATCAACCTATTGGAGTTCAAGATGGGTCATTTATAGCAGATTATTTGACAAGTGAGTTTCAAATAGCTAAATCAAGGATAGTGAATCTGAAAAGCGAGCAGGACTATATTGATGCCCTTGACCATGGACGAGTGGCGGCAATTGTTGAGGAGCGTCCATATGTGGAGATATTAATGTCTCAAACTAAGTGTAAATTCAAAATTGTAGGCCAGGAGTTCACTAAAAGTGGATTGGGATTTGCATTTCAAAGGGACTCTCCCCTTGCTGTGGATTTGTCAACCACCATTCTTCAACTCTCGGAGAACGGCGACCTGCAAAGGATCCATGACAAGTGGTTCAAGACATTTAGCTGTTTTGCACAATCCAATGATTCTAGTTCAAACCAACTCTCTCTCAGTAGTTTCTGGGGTCTCTTTCTTATATGTGGGATTTCATGCTTCCTTGCTCTAGTTACATTTTTTGTCAGGGTGTTCCTTCAATATAAGAAATATATCCGAGACAGTGAGGAAGGTGAAGAAGATGGAGAGCGTGTTGTGACGCCTGTCAGTGCTAGAAGGACATTCAGATCCACCGCTAGCTTCAAGGACTTGATTGGTTTTGTGGATAGAAAGGAAGCCGAAATATTTTCGGACAAGAGTAAAAAACGACGGCGCAGCTAG 2757 0.4276 MATVRLLFILFSCLWISTEVVARTGNTITNKTNVPVRPRVVRVGVLFTLNSYIGRSAKPAIFAALDDVNNDTTILPGIKMEVILVDTNCSGFIGTREALQFTKNEVVAAIGPQSSRVAHVISDVVNELHVPVLSFGATDPTLSSLQYTYFVRTTHSDYFMMNAVADVIDYFGWKEVIAIYVDDDNGRGGITALGDALAKKRSKISYKAAFAVGASTSDISILLNAVNLMESRVYVLHVNPDTGLSIFSLAKKLGMMGNGYVWIATDWLPSVLDAIEPADPDTMNLLQGVIALRRHTPDTDLKKRFLSRMKNSKNKETIGLNSFALYAYDSIWLAARALDAFLNEGGNISFGSDPKLHDTNRSALQFTSFRSFESGPQFLKKVLATNFTGLSGQIQFDGDKNLIHPAYDIVNIDGTSRRIGYWTNYSGLSVVAPEISYTKPPNISSSNQHLSRVIWPGETTTKPRGWVFPNNGKPLRIAVPNRVSYLDFASKSKSPPGVKGYCIDVFEAAINLLPYPVPRQYILYGDGHTNPSYSEITDEVAHGNFDAVVGDITIVTSRIRVVDFTQPYMESGLVVVVPVKEVKSSPWSFLQPFTVQMWCVTGALFLFVGVVVWILEHRINDEFRGPKRRQLMTIFCFTFSTLFSAQRENTVSAGGRTVLLIWAFVVLIINSSYTANLTSILTVQQLTSHIEGIDNLISSNQPIGVQDGSFIADYLTSEFQIAKSRIVNLKSEQDYIDALDHGRVAAIVEERPYVEILMSQTKCKFKIVGQEFTKSGLGFAFQRDSPLAVDLSTTILQLSENGDLQRIHDKWFKTFSCFAQSNDSSSNQLSLSSFWGLFLICGISCFLALVTFFVRVFLQYKKYIRDSEEGEEDGERVVTPVSARRTFRSTASFKDLIGFVDRKEAEIFSDKSKKRRRS 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00565 918 PIRSF IGluLR_plant 1 918 IPR017103 -
Accr13g00565 918 CDD PBP1_GABAb_receptor_plant 46 432 IPR044440 -
Accr13g00565 918 Gene3D - 586 721 - -
Accr13g00565 918 Gene3D - 470 585 - -
Accr13g00565 918 Pfam Receptor family ligand binding region 58 414 IPR001828 -
Accr13g00565 918 Gene3D - 722 819 - -
Accr13g00565 918 SUPERFAMILY Periplasmic binding protein-like I 37 429 IPR028082 -
Accr13g00565 918 FunFam Glutamate receptor 712 816 - -
Accr13g00565 918 FunFam Glutamate receptor 156 320 - -
Accr13g00565 918 SUPERFAMILY Periplasmic binding protein-like II 452 813 - -
Accr13g00565 918 Gene3D - 60 404 - -
Accr13g00565 918 Pfam Ligand-gated ion channel 814 844 IPR001320 GO:0015276|GO:0016020
Accr13g00565 918 FunFam Glutamate receptor 470 586 - -
Accr13g00565 918 FunFam Glutamate receptor 586 716 - -
Accr13g00565 918 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 41 874 IPR015683 -
Accr13g00565 918 Gene3D - 156 428 - -
Accr13g00565 918 CDD GluR_Plant 473 812 - -
Accr13g00565 918 SMART GluR_14 476 814 IPR001320 GO:0015276|GO:0016020
Accr13g00565 918 Pfam Bacterial extracellular solute-binding proteins, family 3 532 813 IPR001638 -
Accr13g00565 918 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 54 70 - -
Accr13g00565 918 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 114 142 - -
Accr13g00565 918 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 327 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00565 Accr-Chr13 6134672 6140205 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00565 37 779 Ion Channels AT1G05200 63.904 0.0 1023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00565 K05387 - qsa:O6P43_000581 1273.07