Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00564 ATGGTGAGGTTATTGTTCATCCTGTTGTTATGCCTGTGGATTTCCACAGAAGTGGTGGGTAGAACCGGAAATACCATTACAAACAAGACTAATGTTCCTACGAGGCCAAGCGTTGTGAGAGTCGGGGTACTGTTTACTCTCAATTCGTACATTGGAAGATCAGCAAAACCTGCCATTCTTGCTGCCCTTAATGATGTTAATAATGATACAACCATTCTTCCTGGCATTAAAATGGATGTTATTTTAGTTGATTCAAATTGCAGCGGCTTTATCGGCACACTGGAAGCTATGCAGTTCATGGAGAATGAAGTGGTTGCTGCTATTGGTCCACAATCATCCGGAATAGCTCATGTCATATCTCATGTTGTTAATGAACTCCATGTGCCTCTTCTGTCATTTGGGGCTACAGACCCTGCTCTTTCTTCTTTGCAGTACACGTATTTTGTCCGCACTACCCATAGTGACTATTTTCTGATGAACGCAGTTGCAGACGTGATTGACTACTTTGGTTGGAAGGAGGTGATTGCCATCTTTGTAGATGATGATAATGGAAGAGGTGGGATTACAGCCCTAGGTGATGCACTTGCAAAGAAGCGTTCTAAGATCTCTTATAAGGCTGCCTTTGCCGTTGGAGCCTCTATAAGCGATATCAGTATATTGTTAAATGAGGTAAACCTAATGGAATCGCGGGTCTTTGTTCTCCATGTTAACCCTGATACTGGTTTGTCCATTTTTTCTCTTGCAAAGAAACTTGGTATGATGGGCAATGGTTATGTTTGGATTGCTACAGATTGGCTTCCTTCGGTTCTAGATGCAATAGAACCAGCTGATCCAGACACAATGAAACTCTTACAAGGGGTTATTGCCCTACGTCGTCATACTCCTGACACTGATCTCAAGAAGAGGTTTATTTCTAGGATGAAAAACAATAAAAATAAGGAGACTACAGGCATTAATTCCTTCGCATTATATGCATATGATTCAATTTGGTTAGCAGCACATGCTCTTGATGCATTTCTTAATGAAGGCGGAAATATATCTTTTGGTAGTGACCCTAAATTGCAAGACACGAATGGAAGTGCACTTCATTTTACATCACTTCGTTCTTTTGAAAGTGGCCCACAGTTTCTGAAGAAAGTCCTCGCAATGAACTTTACTGGTCTAACTGGTCAGATTCAGTTTGATGGGGACAAGAATTTAATCCATCCAGCATATGATATCCTAAACATTGTTGGAACTAGCCGTACAATTGGTTATTGGACTAATTACTCTGGCCTGTCAGTTGTAGCACCTGAAATTTTATATACAAAACCACCCAACATTTCATCTAGCAGTCAACATCTTTCCGGTGTAATATGGCCAGGAGAGACTCCAACAATACCCCGGGGATGGGTGTTTCCCAACAATGGAAAGCCATTGCGAATAGCAGTACCAAACCGAGTAAGCTATACGGACTTTTCTTCCAAAAGCAAGAGCCCCCCTGGAGTAAAAGGTTATTGCATTGACATATTTGAAGCAGCCATAAACCTCTTGCCATATCCCGTCCCACGACAATATATATTATATGGAGATGGTCATACAAATCCCAGCTACAATGAAATCACGGATGCAGTTGCTCATGGGAATTTTGATGCAGTTGTTGGAGATATAGCAATTGTCACAAGCCGGACAAGGGTTGTGGATTTTACTCAACCTTACATGGAATCAGGGTTGGTTGTAGTTGTTCCAGTTAAGGAGGTGAAGTCAAGCCCTTGGTCATTTCTCAAGCCGTTCACTGCACAAATGTGGTGTGTTACTGGTGCCTTCTTTCTCTTGGTGGGAGTTGTGGTTTGGATTCTTGAGCACCGACTCAATCATGAGTTTCGTGGTTCTAAAAGCAAACAACTTATGACCATTTTTTGGTTTAGCTTCTCAACCTTGTTTTTCTCACATAGAGAAAATACCGTGAGTACTTTGGGGAGGATGGTGTTACTAATATGGCTTTTCGTGGTGTTAATCATCAATTCAAGTTACACTGCAAGCTTGACATCCATCCTCACAATACAGCAGCTAGCATCTCAAATTGAAGGAATTGACAGCTTGATTTCAAGTAATCAACCAATTGGAGTTCAAGATGGGTCATTTACGGCGGATTATCTGACAAGTGAGCTAAATATAGCTAAATCTAGGATAGTGAATCTGAAAAGCGAGCAGGACTATATCGATGCCCTTAATCGTGGACCGCAGGGTGGAGGGGTGGCAGCAATTGTTGAGGAGCTTCCATATATGGAGATATTAATGTCTAAAACTAACTGTAAATTCAGAACCGTAGGCCAGGAGTTCACTAAAAGTGGATGGGGATTTGGATTCCAAAGGGACTCTCCTCTTGCTGTGGATTTGTCAACAGCCATTCTTCAACTCTCAGAGAACGGCGACCTGCAAAGGATCCATGACAAGTGGTTCAAGAAATTTAGCTGTCCTGCACAAGCCAATGATTCTGGTTCAAACCAGCTCTCTCTCAATAGCTTCTGGGGTCTCTTTCTTATATGTGGAATTTCATGCTTCCTTGCTCTAGTTACATTTTTTGTCAGGGTGTTCCTACAATATAAGAAATACATCCCAGACAGTGAGGAGGGTGAAGAAGATGGAGAGCGTGTTGTGACGCCTGTCAGTGCTAAAAGGACATTTAGATCCACTGCTAGCTTCAAGGACTTGATTGGTTTTGTAGATAGAAAGGAAGCCGAAATAAAGGAGATATTGAGGGACAAGAGTAAGAAACGACGGCGTAGCCAAAGCTTAGATCGGCGCTCTGATTATTCAAACAACTAA 2808 0.4195 MVRLLFILLLCLWISTEVVGRTGNTITNKTNVPTRPSVVRVGVLFTLNSYIGRSAKPAILAALNDVNNDTTILPGIKMDVILVDSNCSGFIGTLEAMQFMENEVVAAIGPQSSGIAHVISHVVNELHVPLLSFGATDPALSSLQYTYFVRTTHSDYFLMNAVADVIDYFGWKEVIAIFVDDDNGRGGITALGDALAKKRSKISYKAAFAVGASISDISILLNEVNLMESRVFVLHVNPDTGLSIFSLAKKLGMMGNGYVWIATDWLPSVLDAIEPADPDTMKLLQGVIALRRHTPDTDLKKRFISRMKNNKNKETTGINSFALYAYDSIWLAAHALDAFLNEGGNISFGSDPKLQDTNGSALHFTSLRSFESGPQFLKKVLAMNFTGLTGQIQFDGDKNLIHPAYDILNIVGTSRTIGYWTNYSGLSVVAPEILYTKPPNISSSSQHLSGVIWPGETPTIPRGWVFPNNGKPLRIAVPNRVSYTDFSSKSKSPPGVKGYCIDIFEAAINLLPYPVPRQYILYGDGHTNPSYNEITDAVAHGNFDAVVGDIAIVTSRTRVVDFTQPYMESGLVVVVPVKEVKSSPWSFLKPFTAQMWCVTGAFFLLVGVVVWILEHRLNHEFRGSKSKQLMTIFWFSFSTLFFSHRENTVSTLGRMVLLIWLFVVLIINSSYTASLTSILTIQQLASQIEGIDSLISSNQPIGVQDGSFTADYLTSELNIAKSRIVNLKSEQDYIDALNRGPQGGGVAAIVEELPYMEILMSKTNCKFRTVGQEFTKSGWGFGFQRDSPLAVDLSTAILQLSENGDLQRIHDKWFKKFSCPAQANDSGSNQLSLNSFWGLFLICGISCFLALVTFFVRVFLQYKKYIPDSEEGEEDGERVVTPVSAKRTFRSTASFKDLIGFVDRKEAEIKEILRDKSKKRRRSQSLDRRSDYSNN 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00564 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 52 68 - -
Accr13g00564 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 112 140 - -
Accr13g00564 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 325 337 - -
Accr13g00564 935 Coils Coil 902 922 - -
Accr13g00564 935 CDD PBP1_GABAb_receptor_plant 40 430 IPR044440 -
Accr13g00564 935 SUPERFAMILY Periplasmic binding protein-like II 450 815 - -
Accr13g00564 935 FunFam Glutamate receptor 710 818 - -
Accr13g00564 935 Gene3D - 154 426 - -
Accr13g00564 935 Gene3D - 468 583 - -
Accr13g00564 935 FunFam Glutamate receptor 584 714 - -
Accr13g00564 935 Gene3D - 712 821 - -
Accr13g00564 935 Gene3D - 584 711 - -
Accr13g00564 935 PIRSF IGluLR_plant 1 935 IPR017103 -
Accr13g00564 935 MobiDBLite consensus disorder prediction 916 935 - -
Accr13g00564 935 Pfam Ligand-gated ion channel 816 846 IPR001320 GO:0015276|GO:0016020
Accr13g00564 935 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 890 IPR015683 -
Accr13g00564 935 SUPERFAMILY Periplasmic binding protein-like I 35 465 IPR028082 -
Accr13g00564 935 Pfam Receptor family ligand binding region 56 412 IPR001828 -
Accr13g00564 935 FunFam Glutamate receptor 154 317 - -
Accr13g00564 935 Pfam Bacterial extracellular solute-binding proteins, family 3 530 815 IPR001638 -
Accr13g00564 935 FunFam Glutamate receptor 468 584 - -
Accr13g00564 935 Gene3D - 58 402 - -
Accr13g00564 935 SMART GluR_14 474 816 IPR001320 GO:0015276|GO:0016020
Accr13g00564 935 CDD GluR_Plant 471 814 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00564 Accr-Chr13 6110086 6114846 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00564 35 785 Ion Channels AT1G05200 66.931 0.0 1083
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00564 K05387 - qsa:O6P43_000581 1339.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g03266 1 69289409 69293017 Accr13g00564 13 6110086 6114846 CCT
Accr13g00564 13 6110086 6114846 Accr1g03267 1 69295949 69299985 CCT
Accr13g00564 13 6110086 6114846 Accr13g00564 13 6110086 6114846 ECH