Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00563 ATGGCTGTGGTGAGGTTACTGTTCATCCTGTTTTTATGCCTGTGGATTTCCACCGAAGTGGTGGCTCGAACAGGAAATACCATTACAAACAAGACTAATGTTCCTACGAGGCCAAGCGTTGTGAGAGTCGGAGTACTGTTTACTCTCAATTCGTACATTGGAAGATCAGCAAAACCTGCAATTCTTGCTGCCCTCGATGATGTTAATAATGATACAACCATTCTTAGAGGCATTAAAATGGAAGTTATTTTAGTTGATACAAATTGCAGCGGGTTTATCGGCACACTGGAAGCTATGCAGTTCATGGAGAATGAAGTGGTTGCTACTATTGGTCCACAGTCATCCGGAATAGCTCATGTCATATCTCATGTTGTTAATGAACTCCATGTGCCTCTTCTATCATTTGGGGCTACAGACCCTACTCTTTCTTCTTTGCAGTACACATATTTTGTCCGCACCACCCACAGTGACTATTTTCTGATGAACGCAGTTGCAGATGTGATTGACTACTATGGTTGGAAGGAGGTGATTGCCATCTTTGTAGATGATGATAATGGAAGAGGTGGGATTACAGCCCTAGGTGATGCACTTGCAAAGAAGCGTTCTAAGATCTCTTATAAGGCTGCCTTTGCCGTTGGAGCCTCTACAAGCGATATCAGTATATTGTTAAATGCGGTAAACCTAATGGAATCGCGGGTCTATGTTCTCCATGTTAACCCTGACACGGGTTTGTCCATTTTTTCTCTTGCAAAGAAACTTGGTATGATGGGCAATGGTTATGTTTGGATTGCTACAGATTGGCTTCCTTCGGTTCTAGATGCAATAGAACCAGCTGATCCTGACACAATGAAACTCTTACAAGGGGTTATTGCCTTACGCCGTCATACTCCTGACACTGATCTCAAGAAGAGGTTTATCTCTAGGCTGAAGAACAGTAAAAACAAGGAGACTACAGGCCTTAATTCCTTTGCATTATATGCATATGATTCAATTTGGTTAGCAGCACGTGCTCTTGATGCATTTCTTAATGAAGGCGGAAATATATCTTTTGGTACTGACCCTAAATTGCATGACACAAATGGAAGCGCATTGCATTTTACATCACTTCGTTCCTTTGAAAGTGGCTCACAATTTCTCAAGAAAGTCCTGGCAATGAACTTCACTGGTTTGAGTGGTCAAATTCAATTTGATGGGGACAAGAATTTAATCCATCCAGCATATGATATCCTAAACATTGTTGGAACTAGCCGTACAATTGGTTATTGGACTAATTACTCTGGCCTGTCAGTTGTAGCACCTGAAATTTTATATACAAAACCACCCGACATTTCATCTAGCAATCAACATCTTTCTAGTGTAATATGGCCAGGAGAGACTACAACAACACCCCGGGGATGGGTGTTTCCTGACAATGGAAAGCCACTACGAATAGCAGTACCAAACCGAGTAAGCTATACGGACTTTTCTTCCAAAAGCAACAACCCCCCAGGAGTAAAAGGTTATTGCATTGACGTCTTTGAAGCAGCCATTAACCTGCTGCCATATCCCGTCCCACGACAATATATATTATATGGAGATGGCCATACAAATCCCAGCTACAGTGAAATCACGGATGAAGTTGCACATGGGAATTTTGATGCGGTTGTTGGAGATATAGCAATTGTCACAAGTAGGACAAGGATTGTGGATTTTACTCAACCTTACATGGAATCAGGGTTGGTTGTAGTTGTTCCAGTTAAGGAGGTGAAGTCAAGCCCTTGGTCATTTCTCCATCCGTTCACTGCACAAATGTGGTGTGTCACCGGTGCCTTCTTTCTCTCTGTGGGAGCTGTGATATGGATTCTTGAGCACCGGCTCAATCATGAGTTCCGTGGTTCTAAAACCAAACAACTTATGACCATTTTTTGGTTTAGCTTCTCAACATTGTTTTTCTCACATAGAGAAAATACTGTGAGCACTTTAGGGAGGATGGTGTTACTGATATGGCTTTTTGTGGTGTTAATTATCAATTCAAGTTACACTGCTAGCTTGACATCGATCCTCACAGTACAGCAACTAACTTCTCAAATTGAAGGAATTGACAGCTTGATTTCAAGTAATCAACCTATTGGAGTTCAAGATGGGTCATTTATAGCAGATTATCTGACAAATGAACTGCATATAGCTAAATCTAGGATAGTGAATCTGAAAAGTGAGCAGGACTATATCGATGCCCTTGACCGTGGACCGCAGGGTGGAGGGGTGGCAGCAATTGTTGAGGAGCTTCCATATATGGAGATATTAATGTCTAAAACTAAGTGTAAATTCAGAACTGTAGGCCAAGAGTTCACTAAAAGTGGATTGGGATTTGCATTCCAAAGGGACTCTCCCCTTGCTGTGGACTTGTCAACCGCCATTCTTCAACTCTCGGAGAACGGAGACCTACAAAGGATCCATGACAAGTGGCTCAAGACATTAAGCTGTTCTGCACAAGCCAATGATTCTGGTTCAAACCAGCTCTCTCTCAGTAGCTTTTGGGGCCTCTTTCTCATATGTGGGATTGCATGCTTCCTTGCTCTAGTTATATTTTTCGTCAGGGTGTTCCTTCAATATAAGAAATATATCCCTGACAGTGAGGAGGGTGAAGAAGATAGAGAGCATGTTGTGACACCTATCAGTGCTAAAAGGACATTCAAATCCACTGCTAGCTTCAAGGACTTAATTGGTTTTGTTGATAGAAAGGAAGCTGAAATAAAGGAAATATTGAGGGACAAGAGTAAGAAACGACAGCGCAGCCGGAGCTTAGATCGGCACTCCGATTATTCAAACAACTAA 2814 0.4204 MAVVRLLFILFLCLWISTEVVARTGNTITNKTNVPTRPSVVRVGVLFTLNSYIGRSAKPAILAALDDVNNDTTILRGIKMEVILVDTNCSGFIGTLEAMQFMENEVVATIGPQSSGIAHVISHVVNELHVPLLSFGATDPTLSSLQYTYFVRTTHSDYFLMNAVADVIDYYGWKEVIAIFVDDDNGRGGITALGDALAKKRSKISYKAAFAVGASTSDISILLNAVNLMESRVYVLHVNPDTGLSIFSLAKKLGMMGNGYVWIATDWLPSVLDAIEPADPDTMKLLQGVIALRRHTPDTDLKKRFISRLKNSKNKETTGLNSFALYAYDSIWLAARALDAFLNEGGNISFGTDPKLHDTNGSALHFTSLRSFESGSQFLKKVLAMNFTGLSGQIQFDGDKNLIHPAYDILNIVGTSRTIGYWTNYSGLSVVAPEILYTKPPDISSSNQHLSSVIWPGETTTTPRGWVFPDNGKPLRIAVPNRVSYTDFSSKSNNPPGVKGYCIDVFEAAINLLPYPVPRQYILYGDGHTNPSYSEITDEVAHGNFDAVVGDIAIVTSRTRIVDFTQPYMESGLVVVVPVKEVKSSPWSFLHPFTAQMWCVTGAFFLSVGAVIWILEHRLNHEFRGSKTKQLMTIFWFSFSTLFFSHRENTVSTLGRMVLLIWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSNQPIGVQDGSFIADYLTNELHIAKSRIVNLKSEQDYIDALDRGPQGGGVAAIVEELPYMEILMSKTKCKFRTVGQEFTKSGLGFAFQRDSPLAVDLSTAILQLSENGDLQRIHDKWLKTLSCSAQANDSGSNQLSLSSFWGLFLICGIACFLALVIFFVRVFLQYKKYIPDSEEGEEDREHVVTPISAKRTFKSTASFKDLIGFVDRKEAEIKEILRDKSKKRQRSRSLDRHSDYSNN 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00563 937 Gene3D - 585 720 - -
Accr13g00563 937 Gene3D - 470 584 - -
Accr13g00563 937 SMART GluR_14 476 818 IPR001320 GO:0015276|GO:0016020
Accr13g00563 937 FunFam Glutamate receptor 156 318 - -
Accr13g00563 937 Gene3D - 156 428 - -
Accr13g00563 937 Pfam Ligand-gated ion channel 818 849 IPR001320 GO:0015276|GO:0016020
Accr13g00563 937 SUPERFAMILY Periplasmic binding protein-like II 451 817 - -
Accr13g00563 937 Pfam Bacterial extracellular solute-binding proteins, family 3 532 817 IPR001638 -
Accr13g00563 937 CDD GluR_Plant 473 816 - -
Accr13g00563 937 Gene3D - 736 823 - -
Accr13g00563 937 FunFam Glutamate receptor 470 586 - -
Accr13g00563 937 Coils Coil 904 924 - -
Accr13g00563 937 Gene3D - 60 404 - -
Accr13g00563 937 MobiDBLite consensus disorder prediction 916 937 - -
Accr13g00563 937 CDD PBP1_GABAb_receptor_plant 42 432 IPR044440 -
Accr13g00563 937 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 54 70 - -
Accr13g00563 937 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 327 339 - -
Accr13g00563 937 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 114 142 - -
Accr13g00563 937 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 41 888 IPR015683 -
Accr13g00563 937 FunFam Glutamate receptor 586 716 - -
Accr13g00563 937 Pfam Receptor family ligand binding region 58 414 IPR001828 -
Accr13g00563 937 SUPERFAMILY Periplasmic binding protein-like I 37 456 IPR028082 -
Accr13g00563 937 FunFam Glutamate receptor 712 820 - -
Accr13g00563 937 PIRSF IGluLR_plant 1 937 IPR017103 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00563 Accr-Chr13 6079214 6086353 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00563 37 783 Ion Channels AT1G05200 67.112 0.0 1088
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00563 K05387 - qsa:O6P43_028681 1346.64