Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00550 ATGGAGTTACGTTCTCGTAGGCGACTTCCTACCCCTGATACTGATGTAACAACAAATGAACAACTGCCCGTTGATGCCTCTGGAAAAGCTAAAACTGCGAGCGGTTGTGGCAATAATGCAAATGAAGTTTCTTCTGGTTCACATTCCGGATTTGAAGGTGAAGAAGCTTCGAGCTTCTCTCTTGACTTAAATGAAGAATCTACTGCAAGCTTTTGTGCTTCTGATGGTGTAGACGACGACTCCGATTCATCCAGTAGCCAGAATAGTCCGTGTAGAAAGAAAAGAGGAAAGAAAAGGAAAAAAATCAGCTCAAGAAATGGAGAATCCAGTCAGAACACGGGAGTGCTGGAGCAGGGAGACATTGATGACTCCGCAATTGCCAAGGTTTTGGTTAGCCTGAGCAAGAAGAAAAAAACAAAAAGAGCAAGAAAAGATCCAAAGCCAGTGTTGTTGTGGAAGGTGTGGGAAGAGCAGTACGAGAGATGGATTGATGAGAATTTATCAGAAGATATTGATTTGGATCATCAGAATGAGCTAATGGTTGAAACTGCTGAGGCTTCATCTGACCTTACCATGCCGTTACTAAGATACCAAAAGGAATGGCTAGCATGGGCTTTGAAACAGGAGAATTCTGAAATTAAGGGGGGCATTCTTGCAGACGAAATGGGGATGGGAAAGACTATTCAAGCAATTGCTCTTGTCCTTGCCCAACGTGAAACTCGGAAAATGTTATGTGAACCAGATGAAACATCCTCTTTGCCAGGTTCATCTTCAGCCTTGCCTGGGGTCAAAGGAACGCTTGTTATTTGTCCCGTGGTCGCTGTTACTCAGTGGGTTAGTGAGATTGATAGGTTTACTCTCAAAGGAAGCACCAAGGTGCTAATTTATCATGGGGCCAAGAGAGGGAAGTATAGTGAAGAGTTCTCAAAGTACGATTTTGTAATAACTACATACTCTACTGTTGAATGTGAGTATAGGAAATATATGATGCCTCCTAAGGAGAAGTGCCCATATTGTGGCAAATCTTTTAGCCACACAAGGTTAACTATTCACCAGAAATATTATTGTGGGCCTGATGCTGAGAAAACAGAAAAACAATCGAAGCAGTTCAAGAAAAAGAAAAGAGAACTTAATATAAAGAAGATAGATCAGATGAAAATGGAACCGTCAGATGCCAAACACGAGGGGAAGTCACTTTTACATACTGTAAAGTGGCAGCGGATCATTTTGGATGAGGCACACTATATAAAATCTAGACAATGTAACACTGCAAAAGCAATTCTTGCACTAGAGTCTTCCTATAGATGGGCGTTAAGTGGAACTCCCGTTCAGAATCGTGTGGGAGAGCTGTATTCTCTGATACGTTTCTTGCAAATAGTTCCTTTTTCTCATTACTTGTGCAAAGACTGTGATTGCTGGATTCTTGATCATAGTTCTAAGGAATGTCCAAACTGCCAGCACAGTTCTGTCAGACACTTCTGTTGGTGGAATAAATATGTAGCCACGCCAATTCAAGCATATGGAAACAGTGATCCTGGAAGGAGAGCAATGATATTGCTTAAACACAAGGTTTTAAAAAATGTAATATTAAGGCGCACTAAATTAGGCCGGGCTGCTGATCTCGCACTTCCACCAAGAATTATTTCATTGAGAAAGGATAGCCTGGATATAAAAGAGCAAGACTACTATGAATCATTATACAATGAGAGTCAGGCACAGTTTAATACATATGCGGAATCAAATACTTTGACAAATAACTATGCTCATATATTTGACCTCCTGACCAGACTTAGGCAGGCTGTTGTTCATCCATACCTGGTGGTATATTCTCAAGCTGCATTATTAAAAGCTGGGGTTGAGGTTCGCAATGACAATGTTGAACAAGAATGTGGGCTTTGTCATGACCCAGTAGAAGATCCTGTGGTTACCTCATGTGAACACGTCTTTTGTAAGGCATGCTTGATAGACTTCTCTTCTTCCTTAGGGCGAGTGTCATGCCCTTCATGCTCCAAATCACTTACTGTTGATCTAAGTTCAAATAAGGATGTTGGGGATCAGTCTAGAAAAACAACAATAAAGGGTTTCAGATCCTCAAGCATTATAAATAGAATTCAGCTTGAAAACTTTCAAACAAGCACTAAAATAGAGGCATTGAGAGAAGAAATTCGATTCATGGTAGAAAGGGATGGCTCTGCAAAAGGGATTGTTTTTAGCCAGTTCACTTCATTCTTGGATCTCATACACTATTCCCTGCTCAAGTCTGGTGTGTCTTGCACTCAATTGAATGGAAGCATGTCGTTAACTGCTCGGGATGCAGCCATTAAGAGATTTACTGATGACCCAGAATGCAAAATCTTTCTCATGAGCTTGAAAGCTGGTGGTGTGGCCCTCAATTTGACCGTAGCATCATATGTTTTCATCATGGACCCTTGGTGGAACCCGGCCGTGGAGCGTCAGGCTCAAGATAGAATTCACCGAATAGGGCAATATAAACCGATCAGAATTGTCAGGTTTGTGATCGAGAACACTATTGAGGAGAGGATTTTGAAGCTGCAAGAGAAGAAGGAGCTAATATTTGAAGGGACTGTGGGGGGCTCTTCCGAAGCTCTGGGCAAACTCACAGAGGAAGACATGAGATTTCTGTTTACCTGA 2652 0.417 MELRSRRRLPTPDTDVTTNEQLPVDASGKAKTASGCGNNANEVSSGSHSGFEGEEASSFSLDLNEESTASFCASDGVDDDSDSSSSQNSPCRKKRGKKRKKISSRNGESSQNTGVLEQGDIDDSAIAKVLVSLSKKKKTKRARKDPKPVLLWKVWEEQYERWIDENLSEDIDLDHQNELMVETAEASSDLTMPLLRYQKEWLAWALKQENSEIKGGILADEMGMGKTIQAIALVLAQRETRKMLCEPDETSSLPGSSSALPGVKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLIYHGAKRGKYSEEFSKYDFVITTYSTVECEYRKYMMPPKEKCPYCGKSFSHTRLTIHQKYYCGPDAEKTEKQSKQFKKKKRELNIKKIDQMKMEPSDAKHEGKSLLHTVKWQRIILDEAHYIKSRQCNTAKAILALESSYRWALSGTPVQNRVGELYSLIRFLQIVPFSHYLCKDCDCWILDHSSKECPNCQHSSVRHFCWWNKYVATPIQAYGNSDPGRRAMILLKHKVLKNVILRRTKLGRAADLALPPRIISLRKDSLDIKEQDYYESLYNESQAQFNTYAESNTLTNNYAHIFDLLTRLRQAVVHPYLVVYSQAALLKAGVEVRNDNVEQECGLCHDPVEDPVVTSCEHVFCKACLIDFSSSLGRVSCPSCSKSLTVDLSSNKDVGDQSRKTTIKGFRSSSIINRIQLENFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLIHYSLLKSGVSCTQLNGSMSLTARDAAIKRFTDDPECKIFLMSLKAGGVALNLTVASYVFIMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELIFEGTVGGSSEALGKLTEEDMRFLFT 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00550 883 SMART ultradead3 190 465 IPR014001 -
Accr13g00550 883 CDD DEXDc_SHPRH-like 194 532 - -
Accr13g00550 883 SMART helicmild6 745 828 IPR001650 -
Accr13g00550 883 MobiDBLite consensus disorder prediction 1 116 - -
Accr13g00550 883 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 623 685 IPR013083 -
Accr13g00550 883 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 50 883 - -
Accr13g00550 883 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 403 882 IPR027417 -
Accr13g00550 883 SUPERFAMILY RING/U-box 627 674 - -
Accr13g00550 883 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 532 IPR027417 -
Accr13g00550 883 Coils Coil 701 721 - -
Accr13g00550 883 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 207 460 IPR014001 -
Accr13g00550 883 Pfam Zinc finger, C3HC4 type (RING finger) 630 669 IPR018957 GO:0046872
Accr13g00550 883 CDD SF2_C_SNF 712 839 - -
Accr13g00550 883 MobiDBLite consensus disorder prediction 32 71 - -
Accr13g00550 883 SMART ring_2 630 669 IPR001841 -
Accr13g00550 883 Gene3D - 549 883 IPR027417 -
Accr13g00550 883 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 710 874 IPR001650 -
Accr13g00550 883 Gene3D - 341 548 IPR038718 -
Accr13g00550 883 Gene3D - 163 339 IPR038718 -
Accr13g00550 883 Coils Coil 360 380 - -
Accr13g00550 883 Pfam SNF2-related domain 208 607 IPR000330 GO:0005524|GO:0140658
Accr13g00550 883 ProSiteProfiles Zinc finger RING-type profile. 630 670 IPR001841 -
Accr13g00550 883 ProSitePatterns Zinc finger RING-type signature. 645 654 IPR017907 -
Accr13g00550 883 Pfam Helicase conserved C-terminal domain 714 828 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00550 Accr-Chr13 5806410 5812736 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00550 115 883 RAD5 or RAD16-like Gene Family AT1G05120 65.278 0.0 1061
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Accr13g00550 SNF2_N 2.9e-54 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00550 K15083 - gmx:100798333 1224.15