Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00530 ATGAGTCACATGTCGCCCACCGAGTTTACTTGGATCCAACAACAGATGATGTCAAATCCAGAGTTGATGAGGATGGCCTCAGAAAGCATGAAGAACATGAGGCCTGAAGACTTCAAACTTGCTGCAGAGCAGTTAAAGCATACTCGTCCTGAACAGATGGCTGAGATTGGTGAGAAGATGGCAAATGCAACACCTGAAGAAATTGCAGCTGTGTGCGGCCTTGCTTATGCGCTGATGAAATATGAAATAAGTGAAGCTGAGATGTTGAAGAAGAAGGGCAATGAACTTCACAGTCAGGGTAGATTCCTTGAAGCTATGCAGAAGTATTGTCTTGCCAAGCAAAACCTTAGAGAAATTCCATCCTCCGAAGGTAGAAAGCTTCTTTTATCATGCACGCTCAGCTTGATGTCTTGTTACCTGAAGACAGGGCAGTATGATGAATGTGTAAAAGAAGGTTCTGAGGTTTTGGCTTATGATGCCAAAAATCTTAAAGCTCTTTCTCGAAGAGGTCAAGCGTATAAGGAACTTGGTCTACTAGAGGATGCTCTTAGTGATTTAAGCATGGCATGTGAAGTTTGCCCTGGTGATGATACAGTTTCAAAGCTTTTAAGGGAGACCAAGGAAATGTTGGCAGAGGACGGTGGCAAGCATGCATCTAGAGAATGCATGAAGAACATGAGGCCTGAAGACTTCAAACTTGCTGCGGAGCTAAAGCATAATCGTCCTGAACAGATGGCTGAGATTGGTGAGGAGATGGAAAATGCAACACCTGAAGCAGTTGCAGCTATGTTTGCCCTTGCTGATGCGCTGATGAAATATGAAATAAGTGGAGCTGAGATGTTGAAGAAGCAGGGCAATGAACTTCACAGGCAGCGTAGATTCCATGAAGCTATGCAGAAGTATTGGCTTGCCAAGCAAAACCTTAGAGGAATTCCATCCTCACAAAGTAGAAAGCTTCTTGTAGCATGCTCGCTCAACTTGATGTCTTGTTACCTGAAGACAGGGCAGTATGATGAATGTGTAAACGAAGGGTCTGAGGTTTTGGCTTATGATGCAAAAAATCTTAAAGCTCTTTATCGAAGAGGTCAAGCGTATAAGGAACTTGGTCAACTAAAGGATGCTGTTAGTGATTTGAGCATGGCATGTGAAGGTTGCCCTGGTGATGATGCAGTTTCAAAGCTTTTGAGGGAGACCAAGGAAATGTTGGCAGAGGATGGTGGCAAGCATGCACCTAGAGAATGCATGAAGAACATGAGGCCTGAAGACTTCAAACTTGCTGCAGAGCAGTTAAAGCATACTCATTCTGAACAGATGGCTGAGATTGGTGAGGAGATGGCAGATGCAACACCTGAAGAAATTGAAGCTATGTGTGCCCTTGCTTATGCTCTAATGAAATATGAAATAAATGAAGCTGAGATGTTGAAGAGGAAGGGCAATGAACTTCACAGGCAGCGTAGATTCCATGAAGCTATGCAGAAGTATTGTCTTGCCAAGCAAAACCTTAGAGAAATTCCATCCTCCCAAAGTAGAAAGCTTCTTGTAGTATGCTCGCTCAACTTGATGTCTTGTTACCTGAAGACAGGGCAGTATGATGAATGTGTAAAAGAAGGGTCTGAGGTTTTGGCTTGTGATGCAAAAAATCTTAAAGCTCTTTATCGAAGAGGTCAAGCGTACAAGGAACTTGGTCTACTAATGGATGCTGTTAGTGATTTGAGCATGGCATGTGAAGTTTGCCCTGGTGATGATTCAGTTTCAAAGCTTTTAAGGGAGACCAAGGAAATGTTGGCAGAGGATGGTGGCAAGCATGCACGTAGAGGATTAGTATTTGAAGAAATAACTGAAGAAGATCAGAATGTTTCGGCACAAAACTCTGGAAGCTCATCTGTTGAGCAAACAGTGGCTAAGCCGAAAATTTCGAATAGTTCTTCTAAGAGTTCCAGTACAGTCATCAATGACAGTTTAAAATCAAATATGGAAGGTTTAAATGCATTGGAAAATGATCCTGAAGCTATCAGATCATTGCAAAATTTCATTTCAAATGCCGACCCTGCCACTCTTATTTCTTTGAATGCTGGACAATCCAAAGATATGTCGCCTGATATGATTAGAATTGCCTTAAACATGATTAGCAAGATGTCACCACTGGAACTTCAAAAAATGCTAACTCTTATTTCTTTGAATGATGGACAATCCAAAGATATGTCTCCTGATATGATTAGAATTGCCTCAAACATGATTAGCAAGATGTCACCACTGGAACTTCAAAAAATGCTAGACATGGCTTCCTCGGATCAGGGGGACAACCCATTTTTAAGAGGTTCCCCTAATTCTACTATCAATTCTGGATCAATTCCTCCAAATGTGACTCCTGACATGTTTAAAACAGCTTCTGATATGACAAGTAAAATGCCACCATTGGATCTTCAGGAGAGGTTTGAAATGGCTTCCTCAATGTCTGGGAAAGCATCTAGTTCTAGTTCATCGTCTGCAGCTGTCGACAAGAATGTGAGAAATGCTTCAGAGTCAAATTTCCCCGCCTCGAATTCTAATGGAAGAAATGCTTTTGCGGAATCAAGTTCATGTCATGATTCACTTTTATATATGAGAAATGCTGCTCAGTCAAACTTCCCGTCCTCAAGTACTGATTTGCAAGAACAGATGAGAAACCAGATGAAAGATCCAGCCATGCGACAGATGTCCACATCAATGATAACAGATATGAGCCCAGACATGATGGCAAACATGGGGGAACAATTTGATGTCAAGCTTTCAAAAGAAGATGCAGCGAAGGCTCAGCTAGCTATGTCATCCTTGTTACCAGAGGACTTGGATAGAATGATGCGATGGGCTGATCGGGTTCAGAGAGGAGTTGAAGGTGCAAAGAAGACAGAGAATTGGCTACTTGGAAAACCTGGTCTGATATTGGCAATAGTGATGCTCATTTTAGCAGCAATACTGAGGCTGGGTTTCATCGGTGGCTAG 2982 0.4229 MSHMSPTEFTWIQQQMMSNPELMRMASESMKNMRPEDFKLAAEQLKHTRPEQMAEIGEKMANATPEEIAAVCGLAYALMKYEISEAEMLKKKGNELHSQGRFLEAMQKYCLAKQNLREIPSSEGRKLLLSCTLSLMSCYLKTGQYDECVKEGSEVLAYDAKNLKALSRRGQAYKELGLLEDALSDLSMACEVCPGDDTVSKLLRETKEMLAEDGGKHASRECMKNMRPEDFKLAAELKHNRPEQMAEIGEEMENATPEAVAAMFALADALMKYEISGAEMLKKQGNELHRQRRFHEAMQKYWLAKQNLRGIPSSQSRKLLVACSLNLMSCYLKTGQYDECVNEGSEVLAYDAKNLKALYRRGQAYKELGQLKDAVSDLSMACEGCPGDDAVSKLLRETKEMLAEDGGKHAPRECMKNMRPEDFKLAAEQLKHTHSEQMAEIGEEMADATPEEIEAMCALAYALMKYEINEAEMLKRKGNELHRQRRFHEAMQKYCLAKQNLREIPSSQSRKLLVVCSLNLMSCYLKTGQYDECVKEGSEVLACDAKNLKALYRRGQAYKELGLLMDAVSDLSMACEVCPGDDSVSKLLRETKEMLAEDGGKHARRGLVFEEITEEDQNVSAQNSGSSSVEQTVAKPKISNSSSKSSSTVINDSLKSNMEGLNALENDPEAIRSLQNFISNADPATLISLNAGQSKDMSPDMIRIALNMISKMSPLELQKMLTLISLNDGQSKDMSPDMIRIASNMISKMSPLELQKMLDMASSDQGDNPFLRGSPNSTINSGSIPPNVTPDMFKTASDMTSKMPPLDLQERFEMASSMSGKASSSSSSSAAVDKNVRNASESNFPASNSNGRNAFAESSSCHDSLLYMRNAAQSNFPSSSTDLQEQMRNQMKDPAMRQMSTSMITDMSPDMMANMGEQFDVKLSKEDAAKAQLAMSSLLPEDLDRMMRWADRVQRGVEGAKKTENWLLGKPGLILAIVMLILAAILRLGFIGG 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00530 993 MobiDBLite consensus disorder prediction 615 649 - -
Accr13g00530 993 MobiDBLite consensus disorder prediction 816 834 - -
Accr13g00530 993 MobiDBLite consensus disorder prediction 762 802 - -
Accr13g00530 993 MobiDBLite consensus disorder prediction 815 834 - -
Accr13g00530 993 Gene3D Tetratricopeptide repeat domain 462 604 IPR011990 GO:0005515
Accr13g00530 993 Gene3D Tetratricopeptide repeat domain 78 219 IPR011990 GO:0005515
Accr13g00530 993 Gene3D Tetratricopeptide repeat domain 267 410 IPR011990 GO:0005515
Accr13g00530 993 PANTHER TPR_REGION DOMAIN-CONTAINING PROTEIN 412 722 - -
Accr13g00530 993 SMART tpr_5 548 581 IPR019734 GO:0005515
Accr13g00530 993 SMART tpr_5 514 547 IPR019734 GO:0005515
Accr13g00530 993 SMART tpr_5 321 354 IPR019734 GO:0005515
Accr13g00530 993 SMART tpr_5 278 311 IPR019734 GO:0005515
Accr13g00530 993 SMART tpr_5 163 196 IPR019734 GO:0005515
Accr13g00530 993 SMART tpr_5 355 388 IPR019734 GO:0005515
Accr13g00530 993 SMART tpr_5 129 162 IPR019734 GO:0005515
Accr13g00530 993 SMART tpr_5 86 119 IPR019734 GO:0005515
Accr13g00530 993 SMART tpr_5 471 504 IPR019734 GO:0005515
Accr13g00530 993 MobiDBLite consensus disorder prediction 767 796 - -
Accr13g00530 993 SUPERFAMILY TPR-like 272 401 IPR011990 GO:0005515
Accr13g00530 993 SUPERFAMILY TPR-like 464 593 IPR011990 GO:0005515
Accr13g00530 993 SUPERFAMILY TPR-like 80 209 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00530 Accr-Chr13 5568565 5580049 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00530 470 604 Calmodulin-binding Proteins AT5G48570 31.111 8.32e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00530 - - gmx:100800315 665.611