Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00527 ATGTCGGATATACGGAAGTGGTTTATGAAATCCCATGACAAGAACAATGCTTCGGAGTCGAAGCCTACGAACCAAGCCAAGCCTTCTCCAGCTAAACCACAACCGCCAAAACCGGTAGATGGAGGCCAAGATAGTACAGGGAAGAGGAAAACTAGCAAACATGTTGCCGCTGACAAAAACAAAAAAGATGAAAAAGAGGCACAGGAGCTTCCTGCTAAAAGGAAGAATACTAAGGACAGTGAGGACTTGCAGAAGCGTCTTCCTAAAAAAATTCATTTAGATGACGATGACGACGAATCTGACTTGCTCCCATCTAAAAGGAAATCAGTTGATACCACCCCAATAAAAAAATTGAATAGTGAATCCGGTAGGGAAATTCCACTGAAGTCTCCTGATTTGGAAAAAAGTGATGAGGATGATGCATTACCCATTAAGTCTGGTGGAAGGGGCCGTGGAGGAAGAGGAGCATCTGCACCATCATCTAGTGGACGGGGTAGAGGAGGTGGAAGGGGTGGATTTATGAATTTTGGCGAAAGAAAAGATCCTCCTCACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTCCTGATTGTTTGGCTGGTTTGACTTTTGTCATCAGTGGAACATTGGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCATGGTGGTGGTGTCACTGGATCAGTCAGCAAAAAAACGAATTATCTTCTATGTGATGAAGATATAGGAGGTCGGAAGTCTTCAAAAGCAAAAGAGCTGGGGACGCAATTTCTCACTGAGGATGGGTTGTTTGACATGATTCGTGCATCAAAACCTGCAAAGGCTCCTCCACAGGAAGAATCCAAAAAATTGGTGAATAAGTTTGTTGCAATCCAGTCAAAAAGTCCTCAGAAAGCTGGAGTCAAGGTCTCCCAACCTTCAGGCTCAGGCTCAGCTTCAGCTCCAGTGAAGCCCAAGACAGAAAGTTCTGTACAGTCTTCTTTAATGTGGACGGAAAAGTATCGACCTAAGGTTCCAAATGACATCATAGGAAATCAGTCACTTGTTAAACAGCTTCATGATTGGTTGGCACATTGGAATGAACAATTTCTTGACACTGGTAAGAAAAAGGGAAAAAAGCAAAGTGATACTGGTTCAAAAAAAGCTGTTTTACTAAGTGGAACCCCTGGCATAGGAAAAACCACTTCAGCAAAGTTGGTCTGTAAGATGCTTGGTTTCCTGGCTATAGAGGTTAATGCTAGTGACAGCCGTGGTAAGGCTGATAGCAAAATTGTTAAAGGAATCAGTGGAAGCAATGCAAACTCTATAAAGGAACTTGTCAATAATGAATCATTGGGCGCCCAGGCAGATAGGGTGAAGGATTCTAAAACTGTGCTCATCATGGATGAGGTTGATGGCATGTCAGCAGGTGATCGGGGTGGCATTGCTGATCTTATCGCTAGCATCAAGATATCAAAAATTCCTATTATCTGCATTTGTAATGATCGCTACAGCCAAAAACTGAAGAGTCTTGTGAACTACTGTCTGCTGCTTAACTTCCGAAAACCTACAAAGCAACAGATGGCAAAGAGGTTGATGCAAGTTGCGAAGGCTGAAGGACTTCAAGTCAACGAGATTGCTCTTGAGGAGCTTGCAGAAAGAGTTCATGGAGATATGCGCATGGCACTGAATCAGCTACACTATATGAGCCTCTCCAAGTCTGTTATTGACTATGATGACATCAGGCAACGCCTTTTGTCTAGCTCAAAGGATGAGGATATTTCGCCATTCACTGCTGTTGATAAGCTTTTCAGTTTTAATGCTGGGAAGTTAAAAATGGATGAGAGGATTAATCTTGGCATGAGTGATCCTGACCTTGTTCCTCTTCTGATTCAGGAAAATTATATTAATTATAGACCAAGTTTGGCTAGTAAAGATGACAATGATATGAAGCGCATGAAGTTAATTGCCCGTGCTGCTGAGTCCATTGCTGATGGAGACATAGTGAATGTACAGATTCGAAGATATCGGCAGTGGCAGCTCTCTCAAGCTAGTACTCTTGCATCAAGTATAATTCCTGCTTCATTGTTGCATGGGCAAAGGGAAATCCTTGAACCGGGAGAACGGAATTATAATCGGTTTGGTGGTTGGCTTGGGAAAAACTCAACAATGGGCAAAAACTTTAGGCTTTTGGAAGATCTGCAGGTTCACATTCTTTCTTCTCGTGAATCCAGTCCCGGAAGGGGAAGTCTCCGTTTGGATTATCTTAAACCACTTCTTCAACAGTTAACAGAACCACTGCGGGCCTTGCCTAAGGATGAAGCTGTTCAGAAAGTTGTGGAATTTATGAACACGTACTCAATCAGTCAAGAGGATTTTGATACTATTGTCGAACTATCAAAATTCAAGGGTCATCCAAATCCACTTGATGGCATAGTGCCTGCTGTTAAATCTTCACTGACAAAAGCATACAAAGAACAAAGCAAGTCTAGGATGGTTCGAGCCGCTGATCTTGTCACTGTTCCTGGAATGAAAAAGCCTGTTAAGAAGCGAATTGCTGCTATCCTAGAGCCATCTGACGAAGGACTGGAACAGGGTGAGGGCAATGCGCTGGAAGAGAGTGAAGAAGAGAATTCCTCAGATACAGAGGAGTTGGAAGGTACCACCACTGGCGAGAAGCTGCAGTCAGAACTTCTAAGTTTAAATTCAAAGGCCATGCAAGTAGAATTGGATTTGAAGGGAACAGGAAGTTCAAGTGCCAAGAAGAAACCAGTTGGAAGAGGTAGAGGTGGTGCTGCATCAGCCGGGAAGGGCAGTCAAGCTTCGAGAGGCGGGGCAAAAAGAAAGAGGTGA 2841 0.4347 MSDIRKWFMKSHDKNNASESKPTNQAKPSPAKPQPPKPVDGGQDSTGKRKTSKHVAADKNKKDEKEAQELPAKRKNTKDSEDLQKRLPKKIHLDDDDDESDLLPSKRKSVDTTPIKKLNSESGREIPLKSPDLEKSDEDDALPIKSGGRGRGGRGASAPSSSGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGGVTGSVSKKTNYLLCDEDIGGRKSSKAKELGTQFLTEDGLFDMIRASKPAKAPPQEESKKLVNKFVAIQSKSPQKAGVKVSQPSGSGSASAPVKPKTESSVQSSLMWTEKYRPKVPNDIIGNQSLVKQLHDWLAHWNEQFLDTGKKKGKKQSDTGSKKAVLLSGTPGIGKTTSAKLVCKMLGFLAIEVNASDSRGKADSKIVKGISGSNANSIKELVNNESLGAQADRVKDSKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLNFRKPTKQQMAKRLMQVAKAEGLQVNEIALEELAERVHGDMRMALNQLHYMSLSKSVIDYDDIRQRLLSSSKDEDISPFTAVDKLFSFNAGKLKMDERINLGMSDPDLVPLLIQENYINYRPSLASKDDNDMKRMKLIARAAESIADGDIVNVQIRRYRQWQLSQASTLASSIIPASLLHGQREILEPGERNYNRFGGWLGKNSTMGKNFRLLEDLQVHILSSRESSPGRGSLRLDYLKPLLQQLTEPLRALPKDEAVQKVVEFMNTYSISQEDFDTIVELSKFKGHPNPLDGIVPAVKSSLTKAYKEQSKSRMVRAADLVTVPGMKKPVKKRIAAILEPSDEGLEQGEGNALEESEEENSSDTEELEGTTTGEKLQSELLSLNSKAMQVELDLKGTGSSSAKKKPVGRGRGGAASAGKGSQASRGGAKRKR 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00527 946 Gene3D BRCT domain 170 272 IPR036420 -
Accr13g00527 946 MobiDBLite consensus disorder prediction 852 946 - -
Accr13g00527 946 SUPERFAMILY BRCT domain 193 274 IPR036420 -
Accr13g00527 946 Pfam BRCA1 C Terminus (BRCT) domain 195 270 IPR001357 -
Accr13g00527 946 MobiDBLite consensus disorder prediction 885 899 - -
Accr13g00527 946 Pfam ATPase family associated with various cellular activities (AAA) 386 474 IPR003959 GO:0005524|GO:0016887
Accr13g00527 946 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 13 933 - -
Accr13g00527 946 CDD BRCT_RFC1 193 271 - -
Accr13g00527 946 MobiDBLite consensus disorder prediction 862 879 - -
Accr13g00527 946 MobiDBLite consensus disorder prediction 299 327 - -
Accr13g00527 946 FunFam Replication factor C subunit 1 331 518 - -
Accr13g00527 946 CDD HLD_clamp_RFC 519 577 - -
Accr13g00527 946 MobiDBLite consensus disorder prediction 1 196 - -
Accr13g00527 946 Pfam Replication factor RFC1 C terminal domain 659 821 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Accr13g00527 946 Gene3D - 519 589 - -
Accr13g00527 946 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 331 579 IPR027417 -
Accr13g00527 946 PIRSF RFC1 9 921 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Accr13g00527 946 FunFam Replication factor C subunit 1 591 700 - -
Accr13g00527 946 MobiDBLite consensus disorder prediction 1 17 - -
Accr13g00527 946 FunFam Replication factor C subunit 1 519 590 - -
Accr13g00527 946 SMART BRCT_7 195 273 IPR001357 -
Accr13g00527 946 Gene3D - 331 518 IPR027417 -
Accr13g00527 946 MobiDBLite consensus disorder prediction 43 114 - -
Accr13g00527 946 SMART AAA_5 382 520 IPR003593 GO:0016887
Accr13g00527 946 Gene3D - 591 700 - -
Accr13g00527 946 ProSiteProfiles BRCT domain profile. 193 274 IPR001357 -
Accr13g00527 946 FunFam Replication factor C subunit 1 169 272 - -
Accr13g00527 946 SUPERFAMILY post-AAA+ oligomerization domain-like 590 735 IPR008921 GO:0003677|GO:0006260
Accr13g00527 946 MobiDBLite consensus disorder prediction 127 145 - -
Accr13g00527 946 CDD AAA 379 482 - -
Accr13g00527 946 MobiDBLite consensus disorder prediction 177 192 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00527 1 900 Core DNA Replication Machinery Family AT5G22010 68.277 0.0 1106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00527 K10754 - gmx:100790070 1291.56