Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00525 ATGTCAATGGAAATGATGGCAGCTGACCGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTCGCGGTTAGTGTTCCATGCGGCAGCTTACTAACCATAGTGACGGTTAGATGTGGGCATTGTGCCAATTTGCTATCAGTCAATATGGGTGCTTCACTTCAAGCTTTTCCTCCTCATCAGAGTCACCCTCAGTCACAGAAACAGCATCTGGCTTTTGAAGAACCAAGCAACAAAGATCTGGGATCATCCTCAAAAGGCAGCAAGTTAGCTCCATTTGAGTCTGTAGAACATGAGCAACCTAGGATTCCTGCCATTCGCCCCCCTGAGAAGAGACAACGTGTTCCTTCTGCTTATAACCGGTTCATTAAGGAGGAAATCCAAAGGATTAAGGCTAGTAATCCTGATATCAGCCACAGGGAGGCATTTAGCACAGCAGCAAAAAATTGGGCACATTTCCCTCACATTCACTTTGGACTAAAGCTGGATGGGAACAAGCAAGCCAAGTTGGACCAGGAAGAGGGAACTCAAAAGTCTAATGGATTCTACTGA 555 0.4559 MSMEMMAADRVCYVHCNFCNTILAVSVPCGSLLTIVTVRCGHCANLLSVNMGASLQAFPPHQSHPQSQKQHLAFEEPSNKDLGSSSKGSKLAPFESVEHEQPRIPAIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDQEEGTQKSNGFY 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00525 184 CDD HMG-box_SF 115 151 - -
Accr13g00525 184 Pfam YABBY protein 8 161 IPR006780 GO:0007275
Accr13g00525 184 MobiDBLite consensus disorder prediction 58 101 - -
Accr13g00525 184 SUPERFAMILY HMG-box 104 154 IPR036910 -
Accr13g00525 184 MobiDBLite consensus disorder prediction 58 91 - -
Accr13g00525 184 Gene3D High mobility group box domain 98 179 IPR036910 -
Accr13g00525 184 PANTHER PROTEIN YABBY 6-RELATED 1 171 IPR006780 GO:0007275
Accr13g00525 184 FunFam Axial regulator YABBY 106 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00525 Accr-Chr13 5506890 5513193 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00525 1 184 C2C2-YABBY Transcription Factor Family AT1G08465 65.241 5.94e-82 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Accr13g00525 YABBY 4.9e-72 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00525 K25796 - gmx:100500091 301.982