Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00524 ATGTCAATGGAAATGATGGCAGCTGACCGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTCGCGGTTAGTGTTCCATGCGGCAGCTTACTAACCATAGTGACGGTTAGATGTGGGCATTGTGCCAATTTGCTATCAGTCAATATGGGTGCTTCACTTCAAGCTTTTCCTCCTCATCAGAGTCACCCTCAGAAACAGCATCTGGCTTTTGAAGAACCAAGCAACAAAGATCTGGGATCATCCTCAAAAGGCAGCAAGTTAGCTCCATTTGAGTCTGTAGAACATGAGCAACCTAGGATTCCTGCCATTCGCCCCCCTGAGAAGAGACAACGTGTTCCTTCTGCTTATAACCGGTTCATTAAGGAGGAAATCCAAAGGATTAAGGCTAGTAATCCTGATATCAGCCACAGGGAGGCATTTAGCACAGCAGCAAAAAATTGGGCACATTTCCCTCACATTCACTTTGGACTAAAGCTGGATGGGAACAAGCAAGCCAAGTTGGACCAGGAAGAGGGAACTCAAAAGTCTAATGGATTCTACTGA 549 0.4554 MSMEMMAADRVCYVHCNFCNTILAVSVPCGSLLTIVTVRCGHCANLLSVNMGASLQAFPPHQSHPQKQHLAFEEPSNKDLGSSSKGSKLAPFESVEHEQPRIPAIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDQEEGTQKSNGFY 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00524 182 CDD HMG-box_SF 113 149 - -
Accr13g00524 182 FunFam Axial regulator YABBY 104 174 - -
Accr13g00524 182 SUPERFAMILY HMG-box 102 152 IPR036910 -
Accr13g00524 182 Gene3D High mobility group box domain 96 177 IPR036910 -
Accr13g00524 182 MobiDBLite consensus disorder prediction 58 101 - -
Accr13g00524 182 PANTHER PROTEIN YABBY 6-RELATED 1 169 IPR006780 GO:0007275
Accr13g00524 182 Pfam YABBY protein 8 159 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00524 Accr-Chr13 5506890 5513193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00524 1 182 C2C2-YABBY Transcription Factor Family AT1G08465 66.310 3.39e-82 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Accr13g00524 YABBY 1.9e-71 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00524 K25796 - gmx:100500091 311.997