Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00511 ATGGATGAAATCGAAGTTCCCCAGTATTTCGTGTGTCCGATTTCGCTTCAGATCATGAAGGACCCTGTCACAGCACTCACCGGTATAACCTACGACAGAGAAAGCATCGAACAATGGCTGCTCAAAGCTAAAGAACACAAGTGTCCTGTCACGAAGCAGCCATTGCCCAGAGGCGCCGATCTCACCCCCAACCACACCCTCCGCCGTCTCATCCAGGCTTGGTGCTCGGAAAACGCCGCTCTCGGCGTCGATCGCATCCCTAGCCCTAAATCCCCACCCACTAAAACCCTCCTCCAGAAACTTGTCAGAAATCTCAATCTTCCCCATCTCTACCAATCCGCATTGGATAGATTCCAGACTCTGGCCACAGAAAACCAAAGAAACCTCAAGTGCATGGCGGAATCCAGCGTAGCCGAGTCCATGATTCATCTAATTACCAACAAGTCCAACGAGTTAGGTAACAGCAACACTAATTATTCCCTTGAACTCGAACAATCTCTGCGAATTCTACGCCTGCTCTGGGGTACTAGTTGTGACAACATCAAGCCTCTTCTCGTCCACAACATTGACTTCATCAAATCACTGACTCGGATTCTCCATCTCCACAACGTGGCCACCAACGTCAATTTGATAAACGAAGCAATGCCCGTGTTAAAATCCACCATCAAACTCGCAGATTCAACACTTTTAGGAAGTTTAAAACCCGAATTCTTCATCGAAATCACAAGAATACTCAGAAACAGGTCAATCTCACAACAAGCCATGAAGTCCGCGTTGAAAATTCTCATAGAAACGTGTCCTCTAGGTAGAAACAGAACGAGGATAGTGGAAACAGGGGCAGTATATGAATTGGTCCAACTTGAGCTAGAGAATAATACCGAGAAGAACATAACGGAGCTTATATTTAACCTCCTTGCGCAGCTATGTTCGTGTTCGGACGGGAGGGAACAGTTCTTGTCCCACGCGGCAGGGATCGCGGTGGTGTCGAAGAGGGTTCAGAGGGTGTCTCCGGCGACGGATGATAGGGCTCTTCATGTGTTGTGGTTGGTGGCGAGGTACTCGGGGTCAAACGACGTCGTTTTGGAGATGTTGAGGGTCGGAGCTGTGTCCGAGCTTTGCATGGTGATTCAGGCCAATTGTGAACCCAGTTTGAAAGAGAAAGCGAGATCAATTCTGAGGTTACATTCCAATATTTGGAATCATTCACCTTGTATTCAAGTTTATCCGTTAACCAGGCACCAAAGGTGA 1248 0.4792 MDEIEVPQYFVCPISLQIMKDPVTALTGITYDRESIEQWLLKAKEHKCPVTKQPLPRGADLTPNHTLRRLIQAWCSENAALGVDRIPSPKSPPTKTLLQKLVRNLNLPHLYQSALDRFQTLATENQRNLKCMAESSVAESMIHLITNKSNELGNSNTNYSLELEQSLRILRLLWGTSCDNIKPLLVHNIDFIKSLTRILHLHNVATNVNLINEAMPVLKSTIKLADSTLLGSLKPEFFIEITRILRNRSISQQAMKSALKILIETCPLGRNRTRIVETGAVYELVQLELENNTEKNITELIFNLLAQLCSCSDGREQFLSHAAGIAVVSKRVQRVSPATDDRALHVLWLVARYSGSNDVVLEMLRVGAVSELCMVIQANCEPSLKEKARSILRLHSNIWNHSPCIQVYPLTRHQR 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00511 415 SUPERFAMILY RING/U-box 3 84 - -
Accr13g00511 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Accr13g00511 415 FunFam RING-type E3 ubiquitin transferase 6 80 - -
Accr13g00511 415 SUPERFAMILY ARM repeat 108 393 IPR016024 -
Accr13g00511 415 Gene3D - 95 404 IPR011989 -
Accr13g00511 415 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Accr13g00511 415 CDD RING-Ubox_WDSUB1-like 7 64 - -
Accr13g00511 415 PANTHER WDSAM1 PROTEIN 3 406 IPR045185 GO:0061630
Accr13g00511 415 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Accr13g00511 415 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00511 Accr-Chr13 5322537 5323784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00511 2 405 U-box Gene Family AT2G35930 41.032 1.82e-104 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00511 - - gmx:100811293 503.827