Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00507 ATGGGAGTAAACCGTGCGAATTTCTGCATTTTTCTTATTTTTTGCCTGATTGTGGTGATATACGGTGCTACAGACCCAAATGATGTCAAAATTCTGAATGATTTCAAAAAAGGTTTGGAGAATCCAGAGCTTCTTAAATGGCCAGACAATGGGGATGATCCTTGTGGTCCTCCTTTATGGCCTTATGTGTTCTGTGCTGGTAATAGAGTCACACAGATTCAGGCCAAGTCTCTGGGTCTTAAAGGAACATTACCTCCATCCTTTAATCAGCTCTCTGAACTCTTCAACTTAGGCCTTCAACACAACAAGCTTAGTGGGATGCTGCCTACTTTTAGTGGATTATTCAAATTGGAATTCGCTTTCTTAAATGACAATCAATTTGATGGGATCCCATCTGGTTTCTTTGATGGTCTAAGCAGTATTCGCGATTTAGCTTTGGCAGAAAATCCGTTGAATGCGACTACTGGGTGGTCTCTTCCTGCGAGTTTAGAAAACTCAGCACAATTGACGAATCTTTCTCTTGTGCATTGTAATTTGGTTGGGCCAGTACCTGATTTTTTGGGCACGTTGCCTTCTCTTTCAAATTTGTTACTTTCATACAACCGATTGTCTGGCCGTATTCCTAGCAGCTTCGGTCAGTCTTCTATGCAGGTTTTGTGGTTGAATAACCAAGATGGTGGTGGGATGACTGGTCCAATTGATGTTATTGCTTCAATGTCTTCTCTAACCCAGCTTTGGCTTCATGGAAATCAGTTCACTGGCACGATTCCAAAGAATATTGGAAATCTAACTTCCTTGATGGATCTCAATCTCAATAGTAATCAACTTGTTGGCTTGATTCCTGAAGGCTTGGCCAATATGGAACTTCTGAATTTGGTGTTAAACAATAACAGGCTCATGGGTCCTATACCAAAGTTTAAGGCTAGAAATGTTTCGTATGATTTCAATTTCTTTTGTCAAAAGAAGCCAGGCGATGAATGCGCCCCTTCAGTTACTGCTCTACTTGATTTTCTCAGTAATCTGAATTACCCTTCAATGCTCGCTTCTCAATGGTCTGGTAATGAACCGTGTACTGGGCCATGGCTGGGATTGAGCTGCAATCCCAAGTCAGAGGTATCAATTATTAACCTTCCCCACCACAAGCTCAATGGTACTCTGAACCCCTCACTTGCTAAGTTAGCTTCTCTCCTTGAGATCAGGCTTGGAGGGAATAATTTAACTGGCCAAATTCCTAGCAGTTTCACTGAATTGAAATCTTTGAAGCTGTTGGATTTAAGTGGTAATAATCTTGAGCCCCCATTGCCAAATTTACCTGGTGTGAAGATTGTTCTTGATGGCAACCCTCTTTTTGACAACCGAACAAGAAGTCCCCAGCCTATCAGCAGCCCACCACCGCCTTCTAGTTCACAATCTTCACCTCACAGGCCATCTCCATCCTCTGAAAGCCCACCTTCCTCAAGTCAGAGTCCAAGCTCAAGTCCATCAAGTTCAGGACAAGTACAATCACAACAAGGTAAATCTAGAAGATTCAGAACACTTGTAATAGTGGGTGGAGCTGCAGTTTTTGCTATTGCAGCTATTTTGGTTATCTTCCTATCCATATATTGCTCAAAGAAGAAGAAGAAAACCCTGTTAGATGATTCTAGCTCCATTGTGGTTCACCCTCGAGACCCATCCAATCCAGATGTGGTTAAAATTGCAGTAGCAAACAACTCTGCGGGAAGCTTATCGTCGAATACTGGGACAAGTTCTTTGAGAAACATTAGTCATGAATCTGAAAGCTCTCATGTGATTGATGCTGGTAGTCTTGTCATCTCAGTTCAAGTTTTACGTAAGGTTACCAAGAACTTTTCTCCTGAAAATGAGCTAGGCCATGGTGGGTTTGGTACTGTCTATAAAGGTGAACTAGAAGATGGGACGAAAATAGCAGTGAAGAGAATGGAGAGTGGAGTTATGAGCAGGAAAGCACTGCATGAATTTCAGGCTGAAATAGCTGTTCTTTCTAAGGTTCGTCACCGGCATTTAGTATCTCTATTGGGATACTCCATTGAAGGCAATGAAAGACTTTTGGTGTATGAATATATGCCTCTAGGTGCTCTAAGTAGGCATCTTTTTCAATGGAAAAGCCTGAAATTGGAGCCTTTGACTTGGTCGCAAAGGCTTGTGATAGCACTAGATGTTGCTAGAGGAATGGAATACCTCCATGGTCTTGCCCGCCAGATCTACATCCACCGAGACCTCAAGCCTTCTAATATTCTTCTTGACGAAGATTTACGAGCAAAAGTTTCTGATTTTGGCCTGGTGAAACTTGCCCCAGATGGTGAGAAGTCTGTGGTAACTACACTTGCTGGGACATTTGGATATCTTGCCCCTGAATATGCAGTGATGGGGAAAATCACTACTAAGGTTGATGTGTTCAGCTATGGCGTGGTGTTGATGGAACTTCTGACTGGACTGATGGCTCTTGATGAGAGCCGGCCAGAGGAGAGCCGATACCTAGCGCAGTGGTTTTGGCAGATTAAGTCAAGCAAAGAAAAGCTTATGGCAGCCATTGATCCTGCTCTTGAGGCAACTGAGGAGACTTTTGAAATCATGTCCATTATAGCGGAACTTGCTGGACATTGCACTGCCAGGGAACCAAATCACCGACCAGATATGAGTCATGCAGTCAATGTATTGGCTCCATTGGTAGAGAAATGGGTACCAATGAACGACGAATCAGATTGCTTTACTGGCATTGAATTCGGACGACCACTTTCACAGATGCTGAAAGATTGGAAGGAAGCAGGAAGCAGAGATGTTAGTTATGCTAGCCTTGAAGACAGCAAAGGCAGCATACCTGCTAAGCCTGTTGGCTTTGCAGACTCCTTTTCTTCTGCCGATGCTCGATAA 2892 0.4315 MGVNRANFCIFLIFCLIVVIYGATDPNDVKILNDFKKGLENPELLKWPDNGDDPCGPPLWPYVFCAGNRVTQIQAKSLGLKGTLPPSFNQLSELFNLGLQHNKLSGMLPTFSGLFKLEFAFLNDNQFDGIPSGFFDGLSSIRDLALAENPLNATTGWSLPASLENSAQLTNLSLVHCNLVGPVPDFLGTLPSLSNLLLSYNRLSGRIPSSFGQSSMQVLWLNNQDGGGMTGPIDVIASMSSLTQLWLHGNQFTGTIPKNIGNLTSLMDLNLNSNQLVGLIPEGLANMELLNLVLNNNRLMGPIPKFKARNVSYDFNFFCQKKPGDECAPSVTALLDFLSNLNYPSMLASQWSGNEPCTGPWLGLSCNPKSEVSIINLPHHKLNGTLNPSLAKLASLLEIRLGGNNLTGQIPSSFTELKSLKLLDLSGNNLEPPLPNLPGVKIVLDGNPLFDNRTRSPQPISSPPPPSSSQSSPHRPSPSSESPPSSSQSPSSSPSSSGQVQSQQGKSRRFRTLVIVGGAAVFAIAAILVIFLSIYCSKKKKKTLLDDSSSIVVHPRDPSNPDVVKIAVANNSAGSLSSNTGTSSLRNISHESESSHVIDAGSLVISVQVLRKVTKNFSPENELGHGGFGTVYKGELEDGTKIAVKRMESGVMSRKALHEFQAEIAVLSKVRHRHLVSLLGYSIEGNERLLVYEYMPLGALSRHLFQWKSLKLEPLTWSQRLVIALDVARGMEYLHGLARQIYIHRDLKPSNILLDEDLRAKVSDFGLVKLAPDGEKSVVTTLAGTFGYLAPEYAVMGKITTKVDVFSYGVVLMELLTGLMALDESRPEESRYLAQWFWQIKSSKEKLMAAIDPALEATEETFEIMSIIAELAGHCTAREPNHRPDMSHAVNVLAPLVEKWVPMNDESDCFTGIEFGRPLSQMLKDWKEAGSRDVSYASLEDSKGSIPAKPVGFADSFSSADAR 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00507 963 SMART serkin_6 617 897 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr13g00507 963 SMART LRR_typ_2 114 137 IPR003591 -
Accr13g00507 963 SMART LRR_typ_2 263 286 IPR003591 -
Accr13g00507 963 SMART LRR_typ_2 417 440 IPR003591 -
Accr13g00507 963 SMART LRR_typ_2 239 262 IPR003591 -
Accr13g00507 963 SMART LRR_typ_2 91 113 IPR003591 -
Accr13g00507 963 SMART LRR_typ_2 393 416 IPR003591 -
Accr13g00507 963 SMART LRR_typ_2 190 214 IPR003591 -
Accr13g00507 963 FunFam Leucine-rich repeat receptor-like kinase 329 453 - -
Accr13g00507 963 ProSitePatterns Protein kinases ATP-binding region signature. 623 645 IPR017441 GO:0005524
Accr13g00507 963 Gene3D Transferase(Phosphotransferase) domain 1 695 909 - -
Accr13g00507 963 MobiDBLite consensus disorder prediction 458 480 - -
Accr13g00507 963 Gene3D Ribonuclease Inhibitor 329 450 IPR032675 -
Accr13g00507 963 CDD STKc_IRAK 623 896 - -
Accr13g00507 963 MobiDBLite consensus disorder prediction 940 963 - -
Accr13g00507 963 SUPERFAMILY L domain-like 30 437 - -
Accr13g00507 963 Gene3D Phosphorylase Kinase; domain 1 577 694 - -
Accr13g00507 963 FunFam Receptor-like kinase TMK4 26 324 - -
Accr13g00507 963 MobiDBLite consensus disorder prediction 451 507 - -
Accr13g00507 963 FunFam receptor protein kinase TMK1 579 694 - -
Accr13g00507 963 Gene3D Ribonuclease Inhibitor 25 324 IPR032675 -
Accr13g00507 963 Pfam Protein tyrosine and serine/threonine kinase 620 892 IPR001245 GO:0004672|GO:0006468
Accr13g00507 963 SUPERFAMILY Protein kinase-like (PK-like) 596 893 IPR011009 -
Accr13g00507 963 ProSitePatterns Serine/Threonine protein kinases active-site signature. 742 754 IPR008271 GO:0004672|GO:0006468
Accr13g00507 963 PANTHER OSJNBA0070M12.3 PROTEIN 9 963 - -
Accr13g00507 963 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Accr13g00507 963 Pfam Leucine rich repeat N-terminal domain 331 367 IPR013210 -
Accr13g00507 963 FunFam receptor protein kinase TMK1 695 912 - -
Accr13g00507 963 ProSiteProfiles Protein kinase domain profile. 617 897 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr13g00507 963 MobiDBLite consensus disorder prediction 481 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00507 Accr-Chr13 5187749 5190968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00507 80 886 Receptor kinase-like Gene Family AT1G55610 31.093 3.28e-84 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Accr13g00507 PK_Tyr_Ser-Thr 8.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00507 K00924 - tcc:18590223 1308.12