Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00504 ATGGAGTCTCGGATGGATCAGTATGAGATCATGGAGCAGATCGGTCGGGGAGCTTTTGGAGCTGCTATTTTGGTCCATCACAAGGCTGAGAAAACGAAATACGTGTTGAAGAAAATCAGGCTTGCGCGACAGACTGAACGATGCAGGAGATCTGCTCATCAAGAGATGGCACTTATTGCCCGAATACAGCACCCTTACATCGTGGAATTTAAGGAGGCTTGGGTCGAGAAGGGTTGCTATGTCTGCATTGTCACTGGATACTGTGAAGGTGGAGACATGGCTGAATTGATGAAAAAATCAAATGGGGTTCACTTTTCTGAGGAGAAACTCTGCAAGTGGTTTACTCAGTTACTGTTGGCAGTGGAATACTTGCATGCTAACTATGTTTTACATCGAGACCTGAAGTGTTCCAACATCTTTCTTACCAAGGATCATGATGTTCGCCTAGGGGATTTTGGGCTTGCCAAGACCTTAAAAGCAGATGATCTGGCTTCTTCGGTGGTAGGAACTCCCAATTACATGTGTCCTGAATTACTTGCTGATATTCCTTACGGGTTTAAATCTGATATTTGGTCCCTAGGGTGCTGTATATATGAGATGGCTGCTCATCGCCCTGCTTTTAAAGCTTTCGATATGGCAGGATTGATAAGCAAGATAAATCGTTCCTCCATTGGTCCTCTGCCTCCCTGTTATTCCCCATCTTTGAAAACACTGATAAAGGGTATGCTGAGAAAAAATCCTGAGCATCGACCGACAGCATCTGAGATCTTAAAGCATCCTTATTTGCAATCTTATGTTGAACAGTATCGTCCATCTTTCAGTCCTCCAACATCCTGTTCTCCTGAAAAGCCTATTCCTGTTACCCATGATCCTCGAAGAAATATGGCTGAAAGTCAAAACAGTAGCAGTTCAAGCAGTGACAAAGATAGTTCAATGTCAAATGACAGAATCATTTCAGCAGGGTTGCAGAAGTGCGATAACAAAACCACTGAGACAGATATAACCTCCATGGATGATGAGGATGGCCCTGAGCATATCCTGCCTAGCGAAGAAGATACTAGCTCCAGCACTAGCAATGCCAAAGCTGATTGTCAGGAGGTGATGAAACCATCATCTAATGATTGTCAATCAATTGTTGAATCTAAGCAACCAAAATCAATTAAAAACTTAATGATGGCAATTAAAGAAGGAAAAGTTAGAGAAAGTGGTTCTCCAATGAGGGGCACCCGCATTAAGGCTGTTGGTGCATCAGCTCAGAAAACAAACGCAGATACATTGCCTAAATTGCCCAAGTCTAATGCTGTTGCTCCTGGTATCAAGCCGAATTTAGAGTCTCCAACTTTGATATCTGCAAAGACATCCCCTGATCCTCCAAAACGAATGCCAAGATCACATCCTTTAAAGAATCAGGCGCTACTGATGATGGACTCTTCACCAAAAGGTAAACCCAGACACGATGGGACTCCCCCATCTTGTCCAATTAAACAAGTTGAAGGAGATGGAGTTTCTGCCAAGGTTAGGCAAGGGACCCCCCCTAGTTTACTTAGACAACCTTCATTTCGAGGAGGAATGAGGCAGGTTGGGCTTGATGTACGCAATGCAGCAAATGATACGGAGAAGTTTGGTCCAAAAAAAATATCACCGGAGCCAGACAAGAGTCATTATAAGGCGCTCAATGGTCATGTACCACATGCTTCTAAAGAGGTTACAGGGCCTCAGAAGGCTTCTGAAAAATGTTCCAAAGGAATGCAGACTGATAGCAGTAATTCTGTTTCATCTTCAGTGTCTATTCAAGGATGTGAACTTTCAGATGATGCCACGAATTTTATTGACATGGGAGAACAGACACCTTCTGATCATAGGACTGCGACACATATTGAAACTCTTAATTCACATTCAGACAAGAGTCCTTATCAGTCAGCCAATGGTCATATACCACAGGCTTCTGGAGAGATTACTGAGCCTCAGAAGGCTTCTGAAAAATGTCCCAAAGGAATACAGGCAGATAGCAGTAATTCTGTTTCATCTTCAGCGTCTATTCAAGGATTTGAACTTTCTGATGATGCCAAAAAATTTTTTGACATGCGGGAACAGGCGACTTCTGATCATGGGAGCACAACACATAATGAAACTATAAAATCACATCCTGACAGCAGCCCACCTGCTACCTATTTGCCCTGTGAGATGGCTGAAACTGTGTCCAGGGAAGCCTCTGAACCCACCTTGAATCTTCTGAATACAATTACTAATAATGAGAAAGGAAGTTCTGGTCTAACTCTTGATCACCATGCTCTCGATTCCAGTGAAATATTGGCTTTTGAAGATAGTCTCCACATCAATCAGACAAGTACTCCTACTGTTATATGCAGTGAAGAAATCAAAGATCTTCAAGATACTACAAAGCAAGTGACTTCAATCCATCCTCCGAAACTTCCCCTATTGAGTGCTGGAGAAAAGTTTGTTTGTGAAGAAGTCGCTCCAGTAAGCAAGCCTAGTAAAAGGCCCGACACAGTAAGCCAGCCAAAACCCATGCTTGAGTCCTCTGGCGATGACAAGTTCACTGTAAGAGAAAGACTGTCATCTGCAGCCGATACTGCTCTCCCAATCACCTCTACCAATGACCAAAAAGGCTTGCAAGAAGATAAAGGAACCATTTTGCATAATCCAGTGATAGAAAGACCAGCTGTTGGTAATCTTCCTCCAGCTTTTGATGATGTCATCCATGTCATACGGCATAGCAGTTACCGAGTTGGGAGTGAGCAACCAGTAAAGGAATCTGTGGAGATGGGAGTTCAAAATGTGGATGTTGGTAAATTTCTGAAAGTTGTGAGAGATGATTTAGAAATGAGAAACATGGGCATTTCTCTGACCCATAATTCTTCAAATTGCTCAGAAGCTGCGAGCTTGAAGTCAAACATTTCTGATCAATCAGATGCGAGAAGCACGATCATTGCTCCTGCTCTAACACCCTCGAGTTTCTCTGATGCTTTGTGCACAAAGCCAAGTGTCCCTGATCATTCCAGTGTCAAGGAACAAGACGTGAAAAATCTTCCTTCCCTAGTTTCAAAATCCGATTCCACTGAGCTGACCAAATGTAACTCTTCAGTGACCGAAGAGGAAACCCCAGCAAAGGAAACTTTGGATGTTAAATCATTCAGGCAGAGAGCAGATGCTCTGGAAGGGCTCTTGGAGTTGTCTGCAGAGTTACTGCAGCAGAATAGATTGGAGGAGCTTGCTGTTGTTCTAAAGCCCTTTGGGAAAGATATGGTATCCCCAAGGGAGACAGCCATTTGGTTGGCTAAGAGCTTAAAGGGAATGATGAACGATGACCATAGCGGACGTTGA 3345 0.4341 MESRMDQYEIMEQIGRGAFGAAILVHHKAEKTKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAELMKKSNGVHFSEEKLCKWFTQLLLAVEYLHANYVLHRDLKCSNIFLTKDHDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKTLIKGMLRKNPEHRPTASEILKHPYLQSYVEQYRPSFSPPTSCSPEKPIPVTHDPRRNMAESQNSSSSSSDKDSSMSNDRIISAGLQKCDNKTTETDITSMDDEDGPEHILPSEEDTSSSTSNAKADCQEVMKPSSNDCQSIVESKQPKSIKNLMMAIKEGKVRESGSPMRGTRIKAVGASAQKTNADTLPKLPKSNAVAPGIKPNLESPTLISAKTSPDPPKRMPRSHPLKNQALLMMDSSPKGKPRHDGTPPSCPIKQVEGDGVSAKVRQGTPPSLLRQPSFRGGMRQVGLDVRNAANDTEKFGPKKISPEPDKSHYKALNGHVPHASKEVTGPQKASEKCSKGMQTDSSNSVSSSVSIQGCELSDDATNFIDMGEQTPSDHRTATHIETLNSHSDKSPYQSANGHIPQASGEITEPQKASEKCPKGIQADSSNSVSSSASIQGFELSDDAKKFFDMREQATSDHGSTTHNETIKSHPDSSPPATYLPCEMAETVSREASEPTLNLLNTITNNEKGSSGLTLDHHALDSSEILAFEDSLHINQTSTPTVICSEEIKDLQDTTKQVTSIHPPKLPLLSAGEKFVCEEVAPVSKPSKRPDTVSQPKPMLESSGDDKFTVRERLSSAADTALPITSTNDQKGLQEDKGTILHNPVIERPAVGNLPPAFDDVIHVIRHSSYRVGSEQPVKESVEMGVQNVDVGKFLKVVRDDLEMRNMGISLTHNSSNCSEAASLKSNISDQSDARSTIIAPALTPSSFSDALCTKPSVPDHSSVKEQDVKNLPSLVSKSDSTELTKCNSSVTEEETPAKETLDVKSFRQRADALEGLLELSAELLQQNRLEELAVVLKPFGKDMVSPRETAIWLAKSLKGMMNDDHSGR 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00504 1114 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 5 1064 - -
Accr13g00504 1114 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Accr13g00504 1114 MobiDBLite consensus disorder prediction 827 849 - -
Accr13g00504 1114 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr13g00504 1114 MobiDBLite consensus disorder prediction 414 679 - -
Accr13g00504 1114 MobiDBLite consensus disorder prediction 698 725 - -
Accr13g00504 1114 FunFam Serine/threonine-protein kinase Nek2 5 87 - -
Accr13g00504 1114 MobiDBLite consensus disorder prediction 577 617 - -
Accr13g00504 1114 SUPERFAMILY Protein kinase-like (PK-like) 4 317 IPR011009 -
Accr13g00504 1114 MobiDBLite consensus disorder prediction 293 330 - -
Accr13g00504 1114 MobiDBLite consensus disorder prediction 537 558 - -
Accr13g00504 1114 Gene3D Transferase(Phosphotransferase) domain 1 90 337 - -
Accr13g00504 1114 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Accr13g00504 1114 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr13g00504 1114 MobiDBLite consensus disorder prediction 272 361 - -
Accr13g00504 1114 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr13g00504 1114 CDD STKc_Nek 7 262 - -
Accr13g00504 1114 MobiDBLite consensus disorder prediction 629 654 - -
Accr13g00504 1114 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Accr13g00504 1114 FunFam Serine/threonine-protein kinase Nek5 90 335 - -
Accr13g00504 1114 MobiDBLite consensus disorder prediction 665 679 - -
Accr13g00504 1114 MobiDBLite consensus disorder prediction 704 718 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00504 Accr-Chr13 5121624 5127850 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00504 14 264 MAP Kinase Kinase Kinase AT1G53570 31.250 1.38e-36 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Accr13g00504 Pkinase 2.6e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00504 K08857 - gmx:100818747 1273.46