Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00498 ATGTCTTCGTCCTCTCATCCCCCGGACCAGATCATTCACTCCATGAAACGACAACTCCCATTCTCCTCTATGAAACCGTCCTTTGTTGCTCCCGCCGATTATCATCGCTTTGCGCCCGACCAGCGCCGACCTGCTGACCAAGAAGCCGAAACCATCGTCGTTAAGTCCCCTCCATTGAAGCGAAAGAATACCACAGCCAATTCTGAAGCTGATTCTGTTGATAGGATGAACCCAGGATCTAATGAAGCAGCTCATAACCCCTTTCAGACTCCAATGTCAGGAAAAATGGGCAAGGCAAGCAAAGCATCAAAGCTTACAAAATGCAGCAAGGCTGGACCTCAAACCCCAGGATCTAATGTCGGTTCTCCTTCTGGCAACAATCTTACTCCAGCTGGTCCATGTCGTTATGACAGCTCTTTAGGTCTGTTGACAAAAAAGTTCATCAACTTGATCAAGCAAGCTGAGGATGGTATTCTTGATTTGAATAAAGCCGCTGATACATTAGAGGTGCAAAAGAGGAGAATATATGATATAACAAACGTTCTTGAAGGGATTGGTCTTATAGAAAAGAAGCTCAAAAACAGAATTCAATGGAAGGGATTGGACGTGTCAAGGCCAGGGGAGGCTGATGATAGTTTTTCTAGTTTGCAGACAGAAGTTGAAAACCTTACTATGGAGGAGCGCCAGTTAGATGATCAAATAAGGGAGATGCAAGAGAGACTGAGGAAACTTAGTGAAGATGAAAACAATCAAAAGTGGCTTTTTGTCACGGAAGATGATATAAAGGGTTTGCCCTGCTTCATGAACGAAACCTTAATAGCTATTAAAGCTCCCCATGGCACCACCCTTGAGGTCCCTGATCCTGATGAGGCTGTTGATTATCTCCAAAGGAGATACAGGATAATCCTCAGAAGCACAATGGGCCCAATAGATGTTTACCTTGTCAGTCAATTTGAAGAAAAATTTGAGGAGATCAATGGAATTGATGCGCTACCCAATCTGCCATCCAGTCCAGAGTTTAACAGGCATCCTGCAACAGTGATCACTGAGGATAGAAGAAAAGACATAGAAATGCAGGAACAAGATGGTCATAGAGCTAGTTCTGATTTAAATGCCTCACAGGACTTAGTTAGTGGGATCATGAAGATTGTTCCGTCAGATGTTGATAGTGATGCTGATTACTGGCTTCTATCAAATGCTGATGTTAGCATAACAGACATGTGGAGAACAGAATCTGGAATTGAGTGGAACGAACTGGAAGCACTTAATGAAGATTATTGCATGCCTCAAGAGAGCACGGCACGACCTGAGACTCCTCCAAACACGAGTCAGTTGCCTCCTACCGCTAATCCAAAAGGAGGCTGA 1365 0.4418 MSSSSHPPDQIIHSMKRQLPFSSMKPSFVAPADYHRFAPDQRRPADQEAETIVVKSPPLKRKNTTANSEADSVDRMNPGSNEAAHNPFQTPMSGKMGKASKASKLTKCSKAGPQTPGSNVGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDSFSSLQTEVENLTMEERQLDDQIREMQERLRKLSEDENNQKWLFVTEDDIKGLPCFMNETLIAIKAPHGTTLEVPDPDEAVDYLQRRYRIILRSTMGPIDVYLVSQFEEKFEEINGIDALPNLPSSPEFNRHPATVITEDRRKDIEMQEQDGHRASSDLNASQDLVSGIMKIVPSDVDSDADYWLLSNADVSITDMWRTESGIEWNELEALNEDYCMPQESTARPETPPNTSQLPPTANPKGG 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00498 454 PANTHER TRANSCRIPTION FACTOR E2F 74 414 IPR015633 GO:0000978|GO:0006357
Accr13g00498 454 Coils Coil 213 247 - -
Accr13g00498 454 Pfam E2F/DP family winged-helix DNA-binding domain 137 200 IPR003316 GO:0005667|GO:0006355
Accr13g00498 454 SUPERFAMILY "Winged helix" DNA-binding domain 135 198 IPR036390 -
Accr13g00498 454 MobiDBLite consensus disorder prediction 58 75 - -
Accr13g00498 454 SUPERFAMILY E2F-DP heterodimerization region 213 317 IPR037241 -
Accr13g00498 454 SMART E2F_TDP_2 135 200 IPR003316 GO:0005667|GO:0006355
Accr13g00498 454 FunFam E2F transcription factor 1 129 202 - -
Accr13g00498 454 CDD E2F_DD 211 317 IPR032198 GO:0046983
Accr13g00498 454 MobiDBLite consensus disorder prediction 430 454 - -
Accr13g00498 454 Coils Coil 151 171 - -
Accr13g00498 454 Pfam E2F transcription factor CC-MB domain 216 316 IPR032198 GO:0046983
Accr13g00498 454 Gene3D - 207 317 - -
Accr13g00498 454 MobiDBLite consensus disorder prediction 37 130 - -
Accr13g00498 454 Gene3D - 129 202 IPR036388 -
Accr13g00498 454 MobiDBLite consensus disorder prediction 107 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00498 Accr-Chr13 5058481 5062805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00498 10 453 E2F-DP Transcription Factor Family AT5G22220 56.871 2.43e-160 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Accr13g00498 E2F_CC-MB 1.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00498 K06620 - gmx:100819817 697.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr13g00498 13 5058481 5062805 Accr13g00498 13 5058481 5062805 ECH