Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00454 ATGTACCATCACCAACACCAAGGAAAGAACATCCATTCTTCTTCTTCTTCTTCTTCCAGAATGCCAATATCAGCTGAGAGGCACATGTTCCTTCAAACTGGGAATGGTTCTGGTGATTCTGGACTTGTCCTCTCCACTGATGCTAAGCCCAGATTGAAATGGACAGCAGATCTACATGCCAGGTTTATAGAAGCTGTCAATCAGCTAGGTGGAGCTGACAAGGCAACTCCTAAGACAGTAATGAAGCTCATGGGTATTCCAGGGCTTACTTTGTATCATTTAAAGAGCCATCTTCAGAAGTACAGATTGAGCAAGAATCTGCATGGACAAAGTAACACTGTGACACACAAAATCAGTGCCGCAACAGTAGAAAGACTTCCTGAAACAAGTGGAACTCATATGAACAGCTTAAGCCTCACGCCACAGCCTAACAAAGATCTACACATAAGCGAGGCCCTGCAGATGCAGATTGAAGTGCAGAGAAGACTAAATGAACAACTTGAGGTACAGAGACACTTGCAGCTTCGCATAGAGGCCCAAGGGAAATACCTGCAGGCTGTGCTTGAGAAAGCTCAAGAAACACTTGGTAGACAGAATTTGGGGATGATGGGACTTGAAGCAGCAAAAGTTCAACTCTCAGAGCTTGTGTCCAAAGTATCCTCTCAGTGTTTGAGTTCTGCCTTTTCAGAACTGAAGGAGCTACAGGGATTTTGCCCTCAGCAAACACAACAAAACAACCAGCCAAACGACTGCTCAATGGACAGCTGCCTCACATCCTGCGATGGATCTCAAAAGGAACAAGAAATTCAAAATCCAGGGATGGGCTTAAGATCCTTCAATGGCCGTACATTCATGGAAAGAAAGGAAGCAGTGGAAGCAGCACCTATCCTGAGGAACTCTGAACTCAAGTGGTGCGACGAATTGAAAAGGAACAGCACCTTTCTGAGCAATCCTTTGGGCAAAGGTTCGGAAAGAAGAGATTACGCTGCAGAAAGAAGTCCGAGCGATTTATCAATGAGCATCGGACTTGAACGAGAAACTGAGAGGTTAATGATGGGGAGAGAGTCAGATGGTGAATTCCAACACCGAAACACAAACAAGCCAGAATCGATTAAACCACTGGAAGAAAAAATTCCTCAGGAGTATAGATTACCTTATTTTGCAGCATCGAGACTGGATCTCAACACCCGCGAAGAAAACGATTGCAAACAACTGGATTTGAACGGATTCAGCTGGAGCTGA 1242 0.4485 MYHHQHQGKNIHSSSSSSSRMPISAERHMFLQTGNGSGDSGLVLSTDAKPRLKWTADLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSNTVTHKISAATVERLPETSGTHMNSLSLTPQPNKDLHISEALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGMMGLEAAKVQLSELVSKVSSQCLSSAFSELKELQGFCPQQTQQNNQPNDCSMDSCLTSCDGSQKEQEIQNPGMGLRSFNGRTFMERKEAVEAAPILRNSELKWCDELKRNSTFLSNPLGKGSERRDYAAERSPSDLSMSIGLERETERLMMGRESDGEFQHRNTNKPESIKPLEEKIPQEYRLPYFAASRLDLNTREENDCKQLDLNGFSWS 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00454 413 FunFam Myb family transcription factor 48 106 - -
Accr13g00454 413 Gene3D - 48 106 - -
Accr13g00454 413 MobiDBLite consensus disorder prediction 1 21 - -
Accr13g00454 413 MobiDBLite consensus disorder prediction 7 21 - -
Accr13g00454 413 NCBIfam myb-like DNA-binding domain, SHAQKYF class 49 104 IPR006447 GO:0003677
Accr13g00454 413 SUPERFAMILY Homeodomain-like 48 104 IPR009057 -
Accr13g00454 413 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 15 291 IPR044848 GO:0003700
Accr13g00454 413 Pfam Myb-like DNA-binding domain 51 102 IPR001005 -
Accr13g00454 413 Coils Coil 150 170 - -
Accr13g00454 413 MobiDBLite consensus disorder prediction 355 377 - -
Accr13g00454 413 MobiDBLite consensus disorder prediction 316 336 - -
Accr13g00454 413 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 106 IPR017930 -
Accr13g00454 413 Pfam MYB-CC type transfactor, LHEQLE motif 148 194 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00454 Accr-Chr13 4634022 4636385 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00454 81 413 G2-like Transcription Factor Family AT3G04030 52.941 1.16e-104 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Accr13g00454 Myb_DNA-binding 1.2e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g03352 1 69950108 69952393 Accr13g00454 13 4634022 4636385 CCT