Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00449 ATGGCGAGTCACAGACTAGGACAGACTGGTTTGTCTGAATCATCGCCTTCAGGTCATCACTATGGAGTACTTCACGGAATCAATAATAATACTCCTGCATCAGCAGCAGCATCCACCTTAATCAATCAAGGGTCTGCTTTTGATTTTGGAGAGCTGGAAGAGGCAATTGTTCTGCAAGGAGTAGAGATTAGAAATGATGAAGGCAGAGCACCTTTTTTCACATCCAGGCCTGCAGCTACTACTCTGGAAATGTTCCCCTCTTGGCCAATCAGATTTCAACAAACCCATACAGGAGGATCAAAGTCAGGAGGTGAAAGCACTGATTCAGGATCTGGTGTTAACACCATATCAAGCAAAAGTGAACCTCACTTTGAATTTGAACCAGAATCTCCTATTAGTAATAAGAAAGCTTCTGCTTCTTCTTCAGAACTTCATCATCAGAAGCAAGTGATGGCAAGTGGTGGTGCCTTAAGAACAGGCCCATCACAGAATCAATCACCTGCCAAATCACCTCAGGAAAAGAGGAAAGGGGATGGTTCTTCATCATCAGAAAAACAACTTGATGCAAAGACACTGAGACGTCTAGCTCAAAACAGAGAGGCTGCTCGAAAGAGCCGCCTGAGGAAAAAGGCTTACGTGCAGCAGTTAGAATCGAGTAGGATAAAGCTTACACAGCTTGAACAAGACCTTCAAAGAGCACGCTCTCAGGGACTCTTCTTAGGCTGTGCTGGTGCCGGTGGCAACATAAGCTCTGGAGCTGCAATATTTGACATGGAATATGCAAGATGGTTAGAGGAAGACCACCGGCACATGACGGAGTTAAGGGCGGCGCTACAAGCGGGGTTATCCGACGGCGAGTTAAGAATAATGGTGGACGGATATCTGTCACATTACGATGAGATATTCAGGCTCAAAGGAATCGCTGCAAAAACAGACGTGTTTCATCTCATTACGGGCATGTGGACTTCTTCTGCTGAACGTTGCTTCCTTTGGATGGGTGGTTTCAGACCCTCTGAACTCATCACGATGTTGATACAGCAATTAGAGCCACTGGCTGAGCAGCAGATTATGGGAATGTATGGTCTCAGGCATTCCTCACAGCAAGCAGAAGAGGCTCTCTCTCAAGGCCATGAGCAACTCCAACAGTCTCTCGTAGATACCATCGCTGGCGGCCCCATCGGTGATGGCGTGCAACAGATGGTCATCGCCATGAGCAAGCTCTCCAATCTTGAAGGATTCGTCCGACAGGCGGATAACTTGAGGCAACAGACACTGCACCAGTTATGTAGATTGCTGACAATAAGGCAAGCAGCAAGATGCTTCCTTGTAATGGCTGAGTATTATGCTCGTCTTCGTGCCCTTAGTTCTCTTTGGGCTTCCAGACCTCGAGAGACGATGATGAACGACGAGAACTCGTGCCAAACGACAACGACGGAATTTCAAATGGTGCAACCACCTCCTCCTCCTCATCATCATCATCAGAATCATTTTGCTGGTTTCTGA 1503 0.4704 MASHRLGQTGLSESSPSGHHYGVLHGINNNTPASAAASTLINQGSAFDFGELEEAIVLQGVEIRNDEGRAPFFTSRPAATTLEMFPSWPIRFQQTHTGGSKSGGESTDSGSGVNTISSKSEPHFEFEPESPISNKKASASSSELHHQKQVMASGGALRTGPSQNQSPAKSPQEKRKGDGSSSSEKQLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDLQRARSQGLFLGCAGAGGNISSGAAIFDMEYARWLEEDHRHMTELRAALQAGLSDGELRIMVDGYLSHYDEIFRLKGIAAKTDVFHLITGMWTSSAERCFLWMGGFRPSELITMLIQQLEPLAEQQIMGMYGLRHSSQQAEEALSQGHEQLQQSLVDTIAGGPIGDGVQQMVIAMSKLSNLEGFVRQADNLRQQTLHQLCRLLTIRQAARCFLVMAEYYARLRALSSLWASRPRETMMNDENSCQTTTTEFQMVQPPPPPHHHHQNHFAGF 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00449 500 CDD bZIP_HBP1b-like 190 241 - -
Accr13g00449 500 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 193 208 IPR004827 GO:0003700|GO:0006355
Accr13g00449 500 FunFam BZIP family transcription factor 189 238 - -
Accr13g00449 500 Coils Coil 209 236 - -
Accr13g00449 500 SMART brlzneu 186 251 IPR004827 GO:0003700|GO:0006355
Accr13g00449 500 SUPERFAMILY Leucine zipper domain 190 233 IPR046347 GO:0003700|GO:0006355
Accr13g00449 500 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 188 232 IPR004827 GO:0003700|GO:0006355
Accr13g00449 500 ProSiteProfiles DOG1 domain profile. 253 461 IPR025422 GO:0006351|GO:0043565
Accr13g00449 500 MobiDBLite consensus disorder prediction 156 170 - -
Accr13g00449 500 MobiDBLite consensus disorder prediction 92 121 - -
Accr13g00449 500 MobiDBLite consensus disorder prediction 480 500 - -
Accr13g00449 500 Pfam bZIP transcription factor 189 231 IPR004827 GO:0003700|GO:0006355
Accr13g00449 500 MobiDBLite consensus disorder prediction 1 16 - -
Accr13g00449 500 Gene3D - 189 238 - -
Accr13g00449 500 PANTHER TRANSCRIPTION FACTOR TGA9 140 464 - -
Accr13g00449 500 Pfam Seed dormancy control 270 345 IPR025422 GO:0006351|GO:0043565
Accr13g00449 500 MobiDBLite consensus disorder prediction 1 25 - -
Accr13g00449 500 MobiDBLite consensus disorder prediction 171 192 - -
Accr13g00449 500 MobiDBLite consensus disorder prediction 133 148 - -
Accr13g00449 500 MobiDBLite consensus disorder prediction 92 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00449 Accr-Chr13 4582697 4589271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00449 145 500 bZIP Transcription Factor Family AT1G08320 67.227 1.33e-175 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Accr13g00449 DOG1 4.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00449 K14431 - gmx:100775461 695.656