Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00443 ATGGGTCTGAGAGATCAGTACTACTACAATAGTCCCTACTTTCATGCTTCTCCAACTTTCATAGAATGGCTCAAACCATTATCATCATCTTCTTCTTCCTCCTCTGATGATCAGACTTATCAAAGCGAGGTCGTTCGGGAGACTATCCAGTTTCTGCCGCTATCGAAAGATTTCGAGGTTAAAGAGGATAATAATCAAAAGGAGGTGTTTGGATCATCAGTGAAACAAGAGAAAGTGTTGCTGGAGCAAGTTGGGGTGGCTTTGCACATTGGGTTGCCTACTAATAACAGTTACACAGAAGACAGTAGTGGTGATATGAAGAAGAAAGTTAAAGAAGAAGATGATGAAGATGAAGATGATGAGGAGGAGGAAGAAGAAGGCATGAGGATGAAGATGAAGAGAAGCTTCCATGGATTTAATAACCAGCTGGAGAGAAGGTTCTGGATACCAACTCCTGCACAGATCCTAATTGGGCCGATGCAATTTGCTTGCTCCATATGCAGCAAGACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGGCATGGGTCCGAATTTAGGAAAGGACCAGACTCACTAAGGGGATCACAACCAGCAGCAATGTTGAGGCTACCATGTTATTGTTGTGCTCATGGCTGCAAGAACAATATCAACCACCCAAGAGCCAAGCCATTGAAAGACTTCAGAACCCTACAGACACATTACAAGAGAAAGCATGGCTCCAAACCCTTCATGTGCAGAAAATGTGCAAAAACTTTCGCTGTTAAAGGAGATTGGAGGACTCATGAGAAGAACTGTGGCAAGTTATGGTATTGCACTTGTGGTTCAGACTTCAAGCACAAAAGGTCCCTTAAGGATCATATTAGGTCTTTTGGAAAGGGTCACAAACCCCATCCTTCTCTTGAAGGTTTTGAGAAGGATTCTGAAGAAGATGAAGCTATTACTACTACTACTCACACATAA 969 0.4262 MGLRDQYYYNSPYFHASPTFIEWLKPLSSSSSSSSDDQTYQSEVVRETIQFLPLSKDFEVKEDNNQKEVFGSSVKQEKVLLEQVGVALHIGLPTNNSYTEDSSGDMKKKVKEEDDEDEDDEEEEEEGMRMKMKRSFHGFNNQLERRFWIPTPAQILIGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLRGSQPAAMLRLPCYCCAHGCKNNINHPRAKPLKDFRTLQTHYKRKHGSKPFMCRKCAKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHKPHPSLEGFEKDSEEDEAITTTTHT 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00443 322 SUPERFAMILY beta-beta-alpha zinc fingers 153 185 IPR036236 -
Accr13g00443 322 PANTHER ZINC FINGER PROTEIN WIP2 26 314 IPR043584 GO:0003700|GO:0010468
Accr13g00443 322 SMART c2h2final6 162 184 IPR013087 -
Accr13g00443 322 SMART c2h2final6 209 241 IPR013087 -
Accr13g00443 322 SMART c2h2final6 246 266 IPR013087 -
Accr13g00443 322 MobiDBLite consensus disorder prediction 295 322 - -
Accr13g00443 322 MobiDBLite consensus disorder prediction 95 129 - -
Accr13g00443 322 FunFam Zinc finger protein WIP2 215 297 - -
Accr13g00443 322 ProSitePatterns Zinc finger C2H2 type domain signature. 164 184 IPR013087 -
Accr13g00443 322 Gene3D Classic Zinc Finger 161 184 - -
Accr13g00443 322 ProSiteProfiles Zinc finger C2H2 type domain profile. 266 299 IPR013087 -
Accr13g00443 322 Gene3D Classic Zinc Finger 205 294 - -
Accr13g00443 322 MobiDBLite consensus disorder prediction 291 322 - -
Accr13g00443 322 SUPERFAMILY beta-beta-alpha zinc fingers 232 266 IPR036236 -
Accr13g00443 322 ProSiteProfiles Zinc finger C2H2 type domain profile. 162 189 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00443 Accr-Chr13 4516367 4519310 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00443 17 311 C2H2 Transcription Factor Family AT1G08290 56.805 1.55e-121 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr13g00443 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00443 - - tpra:123899635 422.935