Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00442 ATGATGGGTCTGAGAGATCAGTACTACTACAATAGTCCCTACTTTCATGCTTCTCCAACTTTCATAGAATGGCTCAAACCATTATCATCATCTTCTTCTTCCTCCTCTGATGATCAGACTTATCAAAGCGAGGTCGTTCGGGAGACTATCCAGTTTCTGCCGCTATCGAAAGATTTCGAGGTTAAAGAGGATAATAATCAAAAGGAGGTGTTTGGATCATCAGTGAAACAAGAGAAAGTGTTGCTGGAGCAAGTTGGGGTGGCTTTGCACATTGGGTTGCCTACTAATAACAGTTACACAGAAGACAGTAGTGGTGATATGAAGAAGAAAGTTAAAGAAGAAGATGATGAAGATGAAGATGATGAGGAGGAGGAAGAAGAAGGCATGAGGATGAAGATGAAGAGAAGCTTCCATGGATTTAATAACCAGCTGGAGAGAAGGTTCTGGATACCAACTCCTGCACAGATCCTAATTGGGCCGATGCAATTTGCTTGCTCCATATGCAGCAAGACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGGCATGGGTCCGAATTTAGGAAAGGACCAGACTCACTAAGGGGATCACAACCAGCAGCAATGTTGAGGCTACCATGTTATTGTTGTGCTCATGGCTGCAAGAACAATATCAACCACCCAAGAGCCAAGCCATTGAAAGACTTCAGAACCCTACAGACACATTACAAGAGAAAGCATGGCTCCAAACCCTTCATGTGCAGAAAATGTGCAAAAACTTTCGCTGTTAAAGGAGATTGGAGGACTCATGAGAAGAACTGTGGCAAGTTATGGTATTGCACTTGTGGTTCAGACTTCAAGCACAAAAGGTCCCTTAAGGATCATATTAGGTCTTTTGGAAAGGGTCACAAACCCCATCCTTCTCTTGAAGGTTTTGAGAAGGATTCTGAAGAAGATGAAGCTATTACTACTACTACTCACACATAA 972 0.4259 MMGLRDQYYYNSPYFHASPTFIEWLKPLSSSSSSSSDDQTYQSEVVRETIQFLPLSKDFEVKEDNNQKEVFGSSVKQEKVLLEQVGVALHIGLPTNNSYTEDSSGDMKKKVKEEDDEDEDDEEEEEEGMRMKMKRSFHGFNNQLERRFWIPTPAQILIGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLRGSQPAAMLRLPCYCCAHGCKNNINHPRAKPLKDFRTLQTHYKRKHGSKPFMCRKCAKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHKPHPSLEGFEKDSEEDEAITTTTHT 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00442 323 Gene3D Classic Zinc Finger 243 302 - -
Accr13g00442 323 ProSiteProfiles Zinc finger C2H2 type domain profile. 267 300 IPR013087 -
Accr13g00442 323 MobiDBLite consensus disorder prediction 96 130 - -
Accr13g00442 323 ProSitePatterns Zinc finger C2H2 type domain signature. 165 185 IPR013087 -
Accr13g00442 323 MobiDBLite consensus disorder prediction 292 323 - -
Accr13g00442 323 ProSiteProfiles Zinc finger C2H2 type domain profile. 163 190 IPR013087 -
Accr13g00442 323 SUPERFAMILY beta-beta-alpha zinc fingers 154 186 IPR036236 -
Accr13g00442 323 Gene3D Classic Zinc Finger 162 185 - -
Accr13g00442 323 SUPERFAMILY beta-beta-alpha zinc fingers 233 267 IPR036236 -
Accr13g00442 323 PANTHER ZINC FINGER PROTEIN WIP2 26 315 IPR043584 GO:0003700|GO:0010468
Accr13g00442 323 FunFam Zinc finger protein WIP2 216 298 - -
Accr13g00442 323 SMART c2h2final6 247 267 IPR013087 -
Accr13g00442 323 SMART c2h2final6 163 185 IPR013087 -
Accr13g00442 323 SMART c2h2final6 210 242 IPR013087 -
Accr13g00442 323 MobiDBLite consensus disorder prediction 296 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00442 Accr-Chr13 4516367 4519313 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00442 18 312 C2H2 Transcription Factor Family AT1G08290 56.805 1.80e-121 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr13g00442 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00442 - - tpra:123899635 422.935