Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00430 ATGGAAGAGAATCAGAATGGTGGTGACGCTAAGTCGACGATTCCAGAGAGTGAGGAGGATGCCCTTATCGGACCGGGGCCAGCCCCTCGCGCTCGACGCAAACGTCCTCTCCAATTCGGGCAGGCCTACCTCGATGCTTTACCCTCCGCCAACATGTATGAGAAAAGTTATATGCATCGCGATGTAGTTACACATGTTGCTGTTTCAGCTGCAGAATTTTTCATAACCGGGAGTATTGATGGGCAGTTGAAATTTTGGAAGAAAAAGCCTCTTGGTATTGAATTTGCAAAACACTTCAGATCTCATCTTGGTCCAATTGAAGGTCTAGCTGTTAGTGTTGATGGTCTGCTTTGTTGTACAATATCAAATGATCACGCTGTGAAAATATATGACGTAGTCAACTATGACATGATGGCCATGATTCGTTTGCCATATATTCCTGGTGCTGTTGAGTGGGTTTACAAACAAGGCGATGTCAAAGCTAGACTTGCCGTTAGTGACAGAAACTCATCTTTTGTGCACATATATGATGCACGAGCTGGTTCAAATGAACCTATAATCTCCAAACAGGTGCATTTGAGCCCTATTAAAGTTATAAAGTTCAACCCACTATATGATTCTGTAATTTCAGCAGATACAAAGGGGCTAATTGAATATTGGGATCATACGACACTTCAATTCCCAGAGGATAAGGTGAATTTTAAACTGAAAAGCGATACCAATCTCTTTGACATTGCAAAATGCAAGACTTCTGTTTCAACTATTGAGGTCAGTCCAGACGGAAAGCAATTTTCCATAACATCACCTGATCGCAGGATACGTGTGTTTTGGTTCGGAACGGGTAAATTAAGGCGAGTTTATGATGAATCACTTGAGGTTGCTCAAGATCTCCAGCGAAGTGACTCTCCCTTGTATCGGCTGGAAGCCATTGATTTTGGTCGAAGAATGGCTGTTGAGAAGGAGATAGAGAAGACAGAAAATGCACCACTTCCAAATGCAGTTTTTGATGAAAGTTCTAATTTTCTTATATATGCAACCTTGCTTGGCACTAAAATAATAAATTTGCATACCAATAAAGTTGCCCGAATACTTGGGAAGGTGGAGAACAATGATAGGTTCTTAAGAATAGCTTTATATCAAGGGGAACAAAACGGTAAAAAAGTAAGAAAGATTCCTTCAGCAGCTGCAAATGCCAATGAGAAGGAGCCTTTGACAGATCCCACTCTCTTGTGTTGTGCCTTCAAAAAACACAGGATATACTTGTTCAGTCGAAGAGAACCAGAGGAGCCTGAAGACGCAACTAAGGGAAGAGACGTGTTCAATGAAAAGCCTCCTCCTGATGAACTTTTGGCAGTTTCAGATATTGGAAATGCAGTTACAACATCACTTCCGGACAATGTGATTATGCACACTTCTATGGGTGACATTCACATGAAGTTATACCCAGAGGAATGTCCAAAAACTGTGGAGAACTTTACAACTCACTGTCGGAATGGCTATTATGATAACCTTATTTTTCACCGAGTTATTAAAGGCTTCATGATTCAAACAGGGGATCCCTTGGGAGATGGCACTGGTGGGCAGTCTATTTGGGGGAGAGAATTTGAGGATGAATTTCACAAAAGTTTAAGACACGATAGGCCTTTCACAGTATCAATGGCAAATGCGGGCCCAAATACAAATGGTTCTCAGTTCTTTATCACCACAGTGGCCACGCCTTGGTTGGACAACAAGCACACTGTATTTGGCAGAGTTGTGAAGGGAATGGATGTCGTACAGGCTATAGAAAAAGTAAAGACAGACAGGACAGACAAACCATATCAAGATGTTAAAATCCTAAACGTCACTGTACCAAAGTCTTGA 1863 0.4176 MEENQNGGDAKSTIPESEEDALIGPGPAPRARRKRPLQFGQAYLDALPSANMYEKSYMHRDVVTHVAVSAAEFFITGSIDGQLKFWKKKPLGIEFAKHFRSHLGPIEGLAVSVDGLLCCTISNDHAVKIYDVVNYDMMAMIRLPYIPGAVEWVYKQGDVKARLAVSDRNSSFVHIYDARAGSNEPIISKQVHLSPIKVIKFNPLYDSVISADTKGLIEYWDHTTLQFPEDKVNFKLKSDTNLFDIAKCKTSVSTIEVSPDGKQFSITSPDRRIRVFWFGTGKLRRVYDESLEVAQDLQRSDSPLYRLEAIDFGRRMAVEKEIEKTENAPLPNAVFDESSNFLIYATLLGTKIINLHTNKVARILGKVENNDRFLRIALYQGEQNGKKVRKIPSAAANANEKEPLTDPTLLCCAFKKHRIYLFSRREPEEPEDATKGRDVFNEKPPPDELLAVSDIGNAVTTSLPDNVIMHTSMGDIHMKLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQAIEKVKTDRTDKPYQDVKILNVTVPKS 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00430 620 Gene3D - 46 442 IPR015943 GO:0005515
Accr13g00430 620 SMART WD40_4 92 131 IPR001680 GO:0005515
Accr13g00430 620 SMART WD40_4 238 277 IPR001680 GO:0005515
Accr13g00430 620 SMART WD40_4 182 221 IPR001680 GO:0005515
Accr13g00430 620 SMART WD40_4 50 87 IPR001680 GO:0005515
Accr13g00430 620 SUPERFAMILY WD40 repeat-like 57 291 IPR036322 GO:0005515
Accr13g00430 620 MobiDBLite consensus disorder prediction 1 34 - -
Accr13g00430 620 FunFam Peptidylprolyl isomerase domain and WD-repeat protein 1 53 316 - -
Accr13g00430 620 SUPERFAMILY DPP6 N-terminal domain-like 250 428 - -
Accr13g00430 620 CDD cyclophilin_WD40 468 615 - -
Accr13g00430 620 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 463 617 IPR002130 GO:0000413|GO:0003755
Accr13g00430 620 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 462 616 IPR044666 -
Accr13g00430 620 Gene3D - 451 618 IPR029000 -
Accr13g00430 620 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 577 592 IPR002130 GO:0000413|GO:0003755
Accr13g00430 620 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 480 495 IPR002130 GO:0000413|GO:0003755
Accr13g00430 620 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 564 576 IPR002130 GO:0000413|GO:0003755
Accr13g00430 620 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 549 564 IPR002130 GO:0000413|GO:0003755
Accr13g00430 620 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 506 518 IPR002130 GO:0000413|GO:0003755
Accr13g00430 620 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 467 617 IPR002130 GO:0000413|GO:0003755
Accr13g00430 620 FunFam Peptidylprolyl isomerase domain and WD repeat-containing 1 448 618 - -
Accr13g00430 620 Pfam WD domain, G-beta repeat 97 131 IPR001680 GO:0005515
Accr13g00430 620 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 501 518 IPR020892 GO:0003755|GO:0006457
Accr13g00430 620 SUPERFAMILY Cyclophilin-like 464 617 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00430 Accr-Chr13 4282460 4287926 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00430 467 617 U-box Gene Family AT5G67530 47.020 2.70e-41 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00430 K12736 - gmx:100792207 1125.92