Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00425 ATGGATTTTGAGAATGGATCTTCCTCTTCTTCTCCATGCTCAACACCAACCCCTAGCTCTGCTGCATCTCAAAAAAGGAAAGCAGGAAGAAAAAAATTTCGGGAGACTAGACATCCAGTCTTTCATGGTGTCCGGCAAAGAAACGGTGACCGGTGGGTTAGTGAAGTCCGGGAACCCAACAAGAAGTCCAGGATTTGGCTGGGCACTTACCCTAATCCAGAAATGGCGGCTAGGGCACATGACGTGGCTGCCCTAGCTCTCCGAGGCAGCTCGGCTGCTCTCAATTTCCCCGACTTGGCTCATCTCCTCCCTGCCGCCATCTCCTCCTCCGCCCACGACATCAGAGCAGCCGCGGCCAAAGCCGCCCATGCTTTCAGACCAATCGCCACCTCCTCAAATGCTCACCATCACAACATTAATAAATCAAAGCCTTTGTCAGTTGAAGATAATAAGGAAAAGAGCAATGAAGAAGGTGATGACTTCTTGGACGAGGAAGCATTGTATAACATGCCGAGTCTGTTACGTTATATGGCGGAGGGCTTGCTTCTTAGCCCTCCTTTTGTCTGCCGGAGGACCTTAGCTCTCGGTTTCGATGACGACGATGACTTTAGTTGTCAAATGGACTTGGCTTTATGGCCAGACGACTAA 648 0.5031 MDFENGSSSSSPCSTPTPSSAASQKRKAGRKKFRETRHPVFHGVRQRNGDRWVSEVREPNKKSRIWLGTYPNPEMAARAHDVAALALRGSSAALNFPDLAHLLPAAISSSAHDIRAAAAKAAHAFRPIATSSNAHHHNINKSKPLSVEDNKEKSNEEGDDFLDEEALYNMPSLLRYMAEGLLLSPPFVCRRTLALGFDDDDDFSCQMDLALWPDD 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00425 215 CDD AP2 41 99 IPR001471 GO:0003700|GO:0006355
Accr13g00425 215 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
Accr13g00425 215 MobiDBLite consensus disorder prediction 1 46 - -
Accr13g00425 215 MobiDBLite consensus disorder prediction 130 159 - -
Accr13g00425 215 MobiDBLite consensus disorder prediction 141 157 - -
Accr13g00425 215 MobiDBLite consensus disorder prediction 1 24 - -
Accr13g00425 215 Pfam AP2 domain 39 89 IPR001471 GO:0003700|GO:0006355
Accr13g00425 215 SUPERFAMILY DNA-binding domain 40 98 IPR016177 GO:0003677
Accr13g00425 215 Gene3D AP2/ERF domain 40 98 IPR036955 GO:0003700|GO:0006355
Accr13g00425 215 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Accr13g00425 215 PRINTS Ethylene responsive element binding protein signature 79 99 IPR001471 GO:0003700|GO:0006355
Accr13g00425 215 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
Accr13g00425 215 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 16 212 IPR045277 GO:0003700
Accr13g00425 215 FunFam Ethylene-responsive transcription factor 2 39 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00425 Accr-Chr13 4234015 4234662 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00425 8 215 AP2-EREBP Transcription Factor Family AT5G51990 48.341 4.32e-55 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Accr13g00425 AP2 5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00425 - - pcin:129313218 218.394