Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00413 ATGGAGTTCTGGGGCGTTGAGGTCAAGGCTGGGGCACCTGTTGAAGTAGACCCAGAAGAGTTTGATAAATGCATACACCTGTCTCAGGCTGCTCTTGGCGAGGCAAAGAATAAAGCAAGTGAACCTGTGATCCTTTATCTGAAGATTGATGACCAGAAGCTTGTTTTAGGAACCCTTTCCCAGGAGAAATTCCCTCAAATATCTTTTGATTTGGTTCTAGAGAAAAAGTTTGAGCTCTCTCACAATTGGAAAAGTGGAAGTGTTTATTTCTGTGGTTACAAGGCGGAATTACCAGGCGAGATGGATGAGGACATGTCTGACAGTGAGGATGAGGAGGCTATACCATTGGCGATTAAAGATAATGCAAAACCTGATATAAAGCCTGAAGTAGGAAAGGCTGCTGCATCTAAAAGTAAAGATGACAAGCCTTCTGATTCAAAAAAGCAAGTCAAGGTTGTGGATCCAATGGAAGATGAAGAGGATGACTCATCAGATGATGAAGAGGATGATGAATCAGATGATGAAGATGACAGTCCTGATGATGAGGTTATGTTGGGTGGTGCTGGTGATAGTAGTGATGAGAGTAGCGGAGATGGTGATGAAACCCCGCCTAAGAAGGTTGATCATGCTAAGAAGAGACCTAATGAATCTGCCCTGAAAACCCCTGTTCCTGTGAAAAAAGCAAAATCTGCTACCCCTCAAAAGACTGATGGTAAGAAAGGTGTCCATGTAGCAACTCCTTATCCACATAAGAAGGATGGAAAGGTTCCTAAAGGCGACCAAACTCCCAAATCCGGAGGACAGTTTACGTGCAAATCTTGTAGCAAGACTTTTAACTCAGAAGGGGGTCTGCAACAACATTCAAAGGCTAAGCATGGGGGTTAG 885 0.4373 MEFWGVEVKAGAPVEVDPEEFDKCIHLSQAALGEAKNKASEPVILYLKIDDQKLVLGTLSQEKFPQISFDLVLEKKFELSHNWKSGSVYFCGYKAELPGEMDEDMSDSEDEEAIPLAIKDNAKPDIKPEVGKAAASKSKDDKPSDSKKQVKVVDPMEDEEDDSSDDEEDDESDDEDDSPDDEVMLGGAGDSSDESSGDGDETPPKKVDHAKKRPNESALKTPVPVKKAKSATPQKTDGKKGVHVATPYPHKKDGKVPKGDQTPKSGGQFTCKSCSKTFNSEGGLQQHSKAKHGG 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00413 294 MobiDBLite consensus disorder prediction 244 259 - -
Accr13g00413 294 MobiDBLite consensus disorder prediction 117 155 - -
Accr13g00413 294 Gene3D Nucleoplasmin core domain 1 98 - -
Accr13g00413 294 SMART c2h2final6 269 292 IPR013087 -
Accr13g00413 294 SUPERFAMILY beta-beta-alpha zinc fingers 260 291 IPR036236 -
Accr13g00413 294 FunFam Histone deacetylase HDT1 1 99 - -
Accr13g00413 294 Pfam Nucleoplasmin-like domain 3 93 IPR041232 -
Accr13g00413 294 MobiDBLite consensus disorder prediction 117 294 - -
Accr13g00413 294 MobiDBLite consensus disorder prediction 263 286 - -
Accr13g00413 294 ProSitePatterns Zinc finger C2H2 type domain signature. 271 292 IPR013087 -
Accr13g00413 294 Gene3D Classic Zinc Finger 267 293 - -
Accr13g00413 294 ProSiteProfiles Zinc finger C2H2 type domain profile. 269 294 IPR013087 -
Accr13g00413 294 MobiDBLite consensus disorder prediction 156 183 - -
Accr13g00413 294 MobiDBLite consensus disorder prediction 198 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00413 Accr-Chr13 4105616 4108959 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00413 1 113 C2H2 Transcription Factor Family AT5G03740 53.097 3.10e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr13g00413 NPL 1.3e-12 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00413 - - cave:132164179 301.597