Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00404 ATGGAGGACTGTACGTTCACCCCGTCTTTGAACTCTCCGCAGAACGAACAACACTTGGCAAGTACGGCCGACATTAACGGGCCCTTTCTTGCCGTTGGGGTCCAGGACTCCGCCGCCAGAGGGAATTCTGAACCTTCCGGTTCGGAGGTTGGGTTGAAGAAGAAAAGAGGAAGGCCTCGAAAGTACGACGAAAACCTTCCGTCACCAAATTCGGCGCCGCCAGGACTTCCAATCTCTCCATCTTCCAAACGAGGCAGAGGAAGGCCACGTGGCTCTGGAAAATTGCAGATGCTATCTTCAATGGGGGGAATATTTTCAACTACGGCTGGAGGATCCTTTATCCCTCATGTGCTGACTGTGAATCCTGGGGAGGATGTTGTGAAAAGCATAATATCATTTTCTCCTAAAGGCTATCGAGCTCTTTGCATACTCTCAGCTGTTGGAGCTGTCAATGTTGCCGAAATTCTGCAACCTGATTCTTGTGGCGAAATTCTGCAACCTGATTCTTGTGGTCGTCGTTGTGTGAGATGTGAGGGTGTCTTTGAGATCATAACTTTATCTGGATCATATACCTATGGTGATAAAAATCAGGCAAACCTCGCCATGAGGATTGTACTAGCTAAATCTGACGGGGTGATTTTCGGAGGTGCAATCGGGGGCGCACTGATAGCGGCTCGCCCTATTCAACTAATTCTGGGAAGTTTTAAGCAAAAGATGAGTAGTGATATCAAAAGGCTGCTGTCCCCTGGAGAATCTTCCGGTGCTGCCGACGACGCGCCTGGCAACTCAGATGCAGCGGGGCTTTCCTTGCAAATTCCTAGATTGATAGAATCTGAACAGGGCTTTCCTTCACCAACATCTGGACTTATGCTAACATCTAATGGATTGGCTGATCATTCCATGCCTAGAACATCTAATGGATTTCCAAACAATGTCACTGCTACGACAACTAATGGTGATGGTTTAGCAGATTTCTTTCCTCAGAGTCAGAGCTTGCCCTCGTTGAATGGCAGTAGTCTAGACTGTCATGTCTTGCAGCCCTTCGCAGATCCAATGACATTTGGGGATATTAATAATAATGACTCTCATATGTGA 1095 0.4749 MEDCTFTPSLNSPQNEQHLASTADINGPFLAVGVQDSAARGNSEPSGSEVGLKKKRGRPRKYDENLPSPNSAPPGLPISPSSKRGRGRPRGSGKLQMLSSMGGIFSTTAGGSFIPHVLTVNPGEDVVKSIISFSPKGYRALCILSAVGAVNVAEILQPDSCGEILQPDSCGRRCVRCEGVFEIITLSGSYTYGDKNQANLAMRIVLAKSDGVIFGGAIGGALIAARPIQLILGSFKQKMSSDIKRLLSPGESSGAADDAPGNSDAAGLSLQIPRLIESEQGFPSPTSGLMLTSNGLADHSMPRTSNGFPNNVTATTTNGDGLADFFPQSQSLPSLNGSSLDCHVLQPFADPMTFGDINNNDSHM 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00404 364 CDD DUF296 115 235 IPR005175 -
Accr13g00404 364 Pfam AT hook motif 83 93 IPR017956 GO:0003677
Accr13g00404 364 Pfam AT hook motif 53 62 IPR017956 GO:0003677
Accr13g00404 364 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 37 279 IPR039605 GO:0003680
Accr13g00404 364 MobiDBLite consensus disorder prediction 49 63 - -
Accr13g00404 364 MobiDBLite consensus disorder prediction 1 22 - -
Accr13g00404 364 MobiDBLite consensus disorder prediction 1 96 - -
Accr13g00404 364 SMART AT_hook_2 83 95 IPR017956 GO:0003677
Accr13g00404 364 SMART AT_hook_2 53 65 IPR017956 GO:0003677
Accr13g00404 364 Gene3D - 115 248 - -
Accr13g00404 364 ProSiteProfiles PPC domain profile profile. 110 261 IPR005175 -
Accr13g00404 364 Pfam Plants and Prokaryotes Conserved (PCC) domain 115 236 IPR005175 -
Accr13g00404 364 SUPERFAMILY AF0104/ALDC/Ptd012-like 112 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00404 Accr-Chr13 4029772 4032167 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00404 48 235 AT-hook Motif Nuclear Localized (AHL) Family AT2G45850 43.590 1.45e-38 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00404 - - pcin:129313760 429.869