Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00403 ATGAGGAATAATAAGATTGCGGGCCAACAATTATCTATTGTTAGATCCATCGTTGGCGCCGAATATACTGACATGGATATCGTTAGAGCCCTGCACCTGGCCAACAATGACGTTACCGCCGCTATTAACATTATTTTTGATACCCCCAAGCTCAAATTGATAGAGAGAGCAAGTGTGGGCACTCAGAGGAATTCTCCGGTTTCGCATCGAAGTTCAAGCTTTGATGCTGGAACTGGAGGTGGTGTCGTCATGGCGAGTTCTAAGCCAACTGCTGCAGAGGACAAAAACCGCTCTCTGGGGTCGGAAGCAAATGTTGCAGACTCGGTTTCCAACTCACGTGACTGTTTCGCCGAGGACGTGGGAGCGCATTCAAGTTCAACTGCAAGTGATTGGTGGTTCGTGGGTTGTGGGGAGATGGCGGGTCTTTCGACCAGTAAAGGTAGGAGTATGAATCCTGGTGATCAAGTGTTGTTCAACTTTCCGCTGAAGACCGGGGCAACTACACCGTCCCCAGGTAAAGGTTTTGGACGGGGACGGCAGGCAGCAGCAACTTGTTCGGAGATAGTGCGATTCTATACCAAAGAAACGGGAGAGATTGGTAGAATACCGAATGAATGGGCTAGGTGTCTCTTGCCCCTTGTACGCGATAAGAAAGTTAGGATTGATGGGCATTGTAAATATGCTCCAAATAAATTGAGCATTATGGACACTATTCTTTTGTCAGTCAGAGTATTCATCAATAGTTCAATGTTTCGTAAGCATAACCAGGTTTCTCTTAAGGACGCCACCAATTCCACTGACGAATCAGTGTTTCATCCTCTTCCAACATTGTTTAGGTTGCTAGGCTTGAGCCCTTTCAAAAAGGCAGAGTTCACTCCTGGTGACTTGTACTCAAAGAAGCGCCCTTTTAATGAAAAGGAGAACGCTTCTCTTCAGGCAACATTACTGCACATCAAATCCAATCGTCCTTCTGTAAATGATGATGAGACAGACAATGAGGATTCGATATCTGAAACCGACCTTGACAAGATTGTTGGCGTTGGATCTTGCTCAGAGCTAGAGGAAATGGATCCCCCTTGTAGTCTTCAGTGTGAATTGCGGCCCTATCAAAAGCAAGCTCTTCATTGGATGATCCAGCTGGAGAGGGGACGGCCTATGGATGAGGCAGCAACAACTCTTCATCCATGTTGGGAGGCATATCACCTGGCAGACGAGAGGGAGCTAGTTATTTATTTGAATGTTTTTTCTGGTGAAGCTACAATAGAATTTCCAAGCACACTTCAGATGGCCAGAGGAGGAATTTTGGCAGATGCTATGGGGCTTGGAAAGACCATTATGACCATAGCCCTCCTCCTTGTCCATTCAGGCACTGGGGGTTCATCAAGTAGTCAGCTCATGGATCAGCCCTTGTCTGAAAGTGGCGAAGTTAATGACACAGTGCAAAACTCTTCAAATGTATCTAAGAAGGCAAGCAAGTTTTCTGGTTTTGAGAAACTGAGGAAGCAAAGAAATACTCTAACAAGTGGTGGCAGTCTGATAATATGTCCCATGACACTTCTAGGACAGTGGAAGGCGGAGATTGAAACCCATGTGCAGCCTGGATCTCTGTCTTTATATGTTCATTATGGACAGAGTAGACTAAAAGATGCAAAAACTCTGGTTCAGAGTGACGTTGTAATTACTACATATGGAATTGTAGCCTCTGAGTTTTCCATTGAGAATGCAGAGGATAATGGTGGACTTTTCTCAATTCGATGGTTTAGGGTGGTTCTAGACGAGGCACATACTATAAAATCCTCCAAAAGCCAAATATCAATGGCTGTTTCAGCTTTAGTTGCAGACAGACGTTGGTGTCTTACTGGCACTCCTATCCAGAACAACCTCGAGGATATTTATAGTCTTCTTCGATTTCTGAGAATAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAAACTCGTTCAGAAACCATTTGAGGAGGGTGATGAGAGAGGGCTGAAGTTGGTTCAATCCATCTTGAAGCCAATCATGTTGAGGAGAACCAAACATAGCATGGATCAGGACGGCAAGCCTATTATTGTTCTTCCTCCAGCTGAAGTGCGGATAATTTACTGTGAACTCACTGAAGCTGAAAAGGACTTTTATGAGGCACTATTCAAAAGATCTAAGGTCAAGTTTGATCAGTTTATTGAGCAAGGGCGTGTTCTTCATAATTATGCTTCCATATTGGAGCTGCTCTTACGTCTTCGGCAATGCTGCGACCATCCATTTCTTGTAATGAGCCGAGGTGATACTCAAGAATATTCTGATCTCAACAAGCTAGCTAAACGTTTCCTCAAAGGAAGCCATAATGCTCCAGAAGGGGAAGCAAAAGTTGCACCTTCACGGGCTTATATTCAAGAAGTTGTGGAAGAGCTACGTAAGGGGGAACAGGGAGAGTGTCCAATATGTCTTGAAGCATTTGAAGATGCAGTATTGACCCCTTGTGCTCACTGCTTATGCCGGGAATGCCTCTTGGCTAGTTGGAGGAATTCTAATTCTGGTTTATGCCCTGTTTGTAGGAAAACAATAAGCAGGCAGGACCTTTTAACTGCCCCCAGGGAAAGTCGGTTTCAGATGGACATTGAGAAGAACTGGGTGGAGTCATGCAAGGTAACTGCCCTTTTGCATGAACTTGAAAATCTTCGCTCATCAAGCTCTAAGAGCATTGTTTTCAGCCAGTGGACTGCTTTTCTAGACCTCTTGCAGATTCCCTTTACTAGGAATAACATTTCATTTGTTCGTCTTGATGGGACCTTGAATCAGCAGCAGCGTGAAAAAGTACTTAAACGATTCTCAGAAGACAGCAATATCCTGGTGTTGTTGATGTCCCTCAAAGCTGGTGGAGTGGGTATAAATCTAACTGCAGCTTCAAATGCTTTTGTCATGGATCCGTGGTGGAATCCAGCTGTAGAGGAGCAAGCTGTCATGCGAATCCATCGCATCGGACAAACAAAGAATGTGGCCATCAAACGGTTTATCGTGAAGGGGACAGTTGAGGAGAGAATGGAAGCAGTGCAAGCGCGCAAACAGCGAATGATTTCTGGTGCCTTGACTGATCAAGAAGTTCGAACTGCTCGAATCGAGGAGTTGAAGATGCTTTTTACTTAG 3147 0.45 MRNNKIAGQQLSIVRSIVGAEYTDMDIVRALHLANNDVTAAINIIFDTPKLKLIERASVGTQRNSPVSHRSSSFDAGTGGGVVMASSKPTAAEDKNRSLGSEANVADSVSNSRDCFAEDVGAHSSSTASDWWFVGCGEMAGLSTSKGRSMNPGDQVLFNFPLKTGATTPSPGKGFGRGRQAAATCSEIVRFYTKETGEIGRIPNEWARCLLPLVRDKKVRIDGHCKYAPNKLSIMDTILLSVRVFINSSMFRKHNQVSLKDATNSTDESVFHPLPTLFRLLGLSPFKKAEFTPGDLYSKKRPFNEKENASLQATLLHIKSNRPSVNDDETDNEDSISETDLDKIVGVGSCSELEEMDPPCSLQCELRPYQKQALHWMIQLERGRPMDEAATTLHPCWEAYHLADERELVIYLNVFSGEATIEFPSTLQMARGGILADAMGLGKTIMTIALLLVHSGTGGSSSSQLMDQPLSESGEVNDTVQNSSNVSKKASKFSGFEKLRKQRNTLTSGGSLIICPMTLLGQWKAEIETHVQPGSLSLYVHYGQSRLKDAKTLVQSDVVITTYGIVASEFSIENAEDNGGLFSIRWFRVVLDEAHTIKSSKSQISMAVSALVADRRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNKLVQKPFEEGDERGLKLVQSILKPIMLRRTKHSMDQDGKPIIVLPPAEVRIIYCELTEAEKDFYEALFKRSKVKFDQFIEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEYSDLNKLAKRFLKGSHNAPEGEAKVAPSRAYIQEVVEELRKGEQGECPICLEAFEDAVLTPCAHCLCRECLLASWRNSNSGLCPVCRKTISRQDLLTAPRESRFQMDIEKNWVESCKVTALLHELENLRSSSSKSIVFSQWTAFLDLLQIPFTRNNISFVRLDGTLNQQQREKVLKRFSEDSNILVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKNVAIKRFIVKGTVEERMEAVQARKQRMISGALTDQEVRTARIEELKMLFT 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00403 1048 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 774 876 IPR013083 -
Accr13g00403 1048 CDD DEXDc_SHPRH-like 366 679 - -
Accr13g00403 1048 ProSitePatterns Zinc finger RING-type signature. 828 837 IPR017907 -
Accr13g00403 1048 Pfam SNF2-related domain 369 757 IPR000330 GO:0005524|GO:0140658
Accr13g00403 1048 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 123 1048 - -
Accr13g00403 1048 Pfam HIRAN domain 135 242 IPR014905 GO:0003676|GO:0008270|GO:0016818
Accr13g00403 1048 SMART HIRAN_2 134 246 IPR014905 GO:0003676|GO:0008270|GO:0016818
Accr13g00403 1048 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 352 679 IPR027417 -
Accr13g00403 1048 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 691 1037 IPR027417 -
Accr13g00403 1048 CDD SF2_C_SNF 879 1006 - -
Accr13g00403 1048 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 883 1048 IPR001650 -
Accr13g00403 1048 SMART helicmild6 912 995 IPR001650 -
Accr13g00403 1048 Gene3D - 695 1048 IPR027417 -
Accr13g00403 1048 MobiDBLite consensus disorder prediction 462 486 - -
Accr13g00403 1048 FunFam DNA repair protein RAD5B 421 680 - -
Accr13g00403 1048 Gene3D - 424 692 IPR038718 -
Accr13g00403 1048 Pfam Zinc finger, C3HC4 type (RING finger) 810 858 - -
Accr13g00403 1048 Pfam Helicase conserved C-terminal domain 884 995 IPR001650 -
Accr13g00403 1048 SUPERFAMILY RING/U-box 800 859 - -
Accr13g00403 1048 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 424 641 IPR014001 -
Accr13g00403 1048 MobiDBLite consensus disorder prediction 62 104 - -
Accr13g00403 1048 SMART ring_2 813 852 IPR001841 -
Accr13g00403 1048 ProSiteProfiles Zinc finger RING-type profile. 813 853 IPR001841 -
Accr13g00403 1048 SMART ultradead3 362 660 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00403 Accr-Chr13 4010305 4020638 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00403 5 1048 RAD5 or RAD16-like Gene Family AT5G22750 69.648 0.0 1490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Accr13g00403 SNF2_N 9.6e-89 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00403 K15505 - qsa:O6P43_000417 1625.14