Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00402 ATGGAGGCCCCTGTCGTTAGATCGAGGGGTCGGCCGAGGAAACGGAGGAGAAAAGAGGATGAGAATGGGACGGATGACGGGGGATCGGTTCCCGATTTGAAAAAGCAAGCTGTTGGGACTAGGAGACCGATAGCACTGGTTGGACGATATATACTTAAAGAGTTTAAGGGAAGCGGGGTCTTTCTGGGGAAAGTTGTGTATTACGAGTGTGGTTTATATAGAGTCAATTACGAGGATGGTGATTATGAGGATTTAGATAGCAACGAGATTCGTGGAATGCTTCTCAATGACTGTGATTTTGATGATGAGTTTTCTAAAAGGAGGAATAAATTAGATCAATTGGTGTTGAAGTTTAGTGCAAAGGAAACATATGGCACGGAGAATAGTTCTGCTGACTTAAAAAAAGATGTCCTCAGTCTTGAGGCCCCTGCTTCAAGTGAATTGCCTGGTGGGTCATTGATTGAACCCGACGAGGTAGATGTTGAGGAGGATGCTCATTCATCAAGTGACGAAAGAGATTCCGCGTCTGATGCTGAGATACCTTCTCTACCTCCTCCACTGCAGTTGCCGCCGTCTTCAGGGACTATTGGGGTGCCAGAGCTATATGTCTCTCATCTTCTTGCAGTCTATGGATTTTTACGGTCATTCAGCATTCGCCTGTTTTTAAGTCCGTTTTCTCTGGATGATTTTGTTGGTTCTCTTAACTGCCAAGTTTCAAATACTTTGTTTGATTCCATTCATGTTTCACTGATGCGCACATTGAGGCGTCGTCTTGAAACTCTTTCATCTGAGGGCTCAGAGCATGCATCAAAATGCTTGAGGTGTAATGATTGGGGCTTGCTTGATGCATTGACTTGGCCTGTTTTTGTTATTCAATATCTAGCAATTTATGGATACACAAAAGGACCTGAGTGGAAAGGATTTTATGATGAGATTTTTAATGGTGAATATTATTTATTACCTGTAAGTAGGAAGTTGACCATACTGCAAATTCTTTGTGATGATGTTTTGGAGTCGGAGGAAATGAATGCTGAAATGGGCATTCGTGAAGAATTAGAAGTTGGGATGGAGTATGATGCTCAAGATATCCTTCCAGAAGAAAATTGGCCTCGATCACATCCAAGAAATGCTAAAATTGCTAGCATGGATAAAGAAGTTAAAAAGTTTGGTTTAGAATCTAATGCTGTGAAGCCACCTAGCAACTCTGTTCTAGATTTCAGAGACAGAAGAAGGACTGAGGATGCTGATGTTGACAGAAATGGAGATGAATGCCGTCTCTGTGGCATGGATGGGACCTTGCTTTGTTGTGATGGATGTCCGTCTGCATATCACTCTAGGTGTATTGGAGTGATGAAAATGTTTATACCAGAAGGGCCATGGTATTGTCCAGAGTGCAAAATTAATATGAATGGGTTAAGCATTGCACGGGGAACATCGCTTAGAGGGGCTGAATTATTTGGAATGGATCTGTATGGACAACTCTTCATGGGTACTTGTGACCACTTACTGGTACTCACTGTCAACAGTGAACTTTGTCTCAGATATTACAACCAGAATGACATCTCAAAAGTTCTCCAAGTGCTTTGCGCTTCAGTAGACCATAGGCCCCTATATTCTCAAATTTGTATGGCTGTGTTACATTATTGGAGTATTCCAGAAAGTATCTTGCCTGTATCTGTTAGATCTGGAACAGATGCTAACAATTCAAGTACAGAGGAAGATGCTAAGTTCTCTAGTTTATCAGCCACTCCTTTGGGTGCAAAAGAGAATATATCTTTTGATTTAGTGAAGGCAGAACACCCTGTAGACAGTGGTATTGTAATTCATGGTAATTACATGGTTCCATCTGACTCGTTGGTTTCCACTACCAGAGGGGCCTATGCTTTTGAAAGCAGCAATGACACTAGAACCAGAGAGTGCTTTGCAATGAATACTACATTTCCTAAGGAGACTAGAATGGCGTCAGTCATCTCTGGCGGTCCTGGTGGCCATCAGCGCAGTCCCTTTGATGTGACCAACAGTCATGGACGTGCAAATGATAGGCAGTTGCCTTTTATTCCATCCTTGCAACTTAAAGAAGGCAACCAAGCTTGCTCTGGAAAGGTTGAACATAACTCAACTAAGGATTTTACATACATGGGTTTTTCTTTTAAGCCTCAGTCTTACGTTAATCACTATATGCATGGTGATTTTGCTGCATCTGCTGCTGGTAAGTTGGCCATTCTTTCTTCTGAGGATTCGAGGTCAGAGGGTCATGTCTCAGATAATTTGAGGAAATTTACAGCTGAAAGTGCTTCTTTGCAAGCAAAAGCATTCTCAATGACGGTTTCACGCTTCTTTTGGCCAAGTTCTGAAAAGAAGCTTGTGGAAGTTCCAAGGGAGAGGTGTGGCTGGTGCCTTTCTTGTAAAGCCTCTGCATCAAGCAAGAGAGGCTGCATGCTAAATCATGCCGCCCTGAGTGCCACCAAAAGTGCTATAAAAGTTTTAAGTGGTCTTTCCACTATAAGGAGTGGAGAGGGAAGTCTTCAAAGCATTGCAACATATATCATATATTTGGAGGAAAGCTTACATGGTTTAATAGTTGGGCCTTTTCTCAATGCAAATTACCGAAAACAATGGCGTAAACGAGTTGAACAGGCTAAAACATTTAAAGCTATAAAGCCTCTTTTGCTTGAACTTGAGGAAAACGTTCGCATAATATCTTTTACTGGTGAGTGGGTTAAGCTGATGGATGATTGGTTGGTTGAATCTTTTATTATTCAAGGTGCTTCAAGTTCTGTAGGAACAATACAGACACGTGCACCAAGTGGAAGGCGCCACAAGAAACAATCAGCTATTGATGAAGTGACAGCTGATGGTTCTCAAGAAAAGAATTTTGACTGGTGGCATGGTGGTAAATCCATGAAAATATTATTTCTAAAAGCAGTTTTGCCAAAATCTGCTGTCAGAAAAGCAGCTCGCCAAGGTGGATCGAAGAAAATTTTTGGTATTTCCTATGCTGATGGCTTTGAAATCCCTAAAAGAAGCAGACAGATAGTTTGGAGAGCTGCAGTACAAATGAGTAGGAATGTATCACAGCTCGCACTGCAGGTCAGATACCTTGATTTTCATCTCAGATGGAGTGATCTGATTTGTCCTGAGCAAAATCTCCAGGATGGGAAAGGTCAAGAGACTGAATCTTCTGCGTTTAGAAATGCTAATATCTGTGATAAGAAAGAAGTGGGGGGGAAACTTTTGTATGGAGTTGTTTTTAGGAACCAAAAGCATCTTCCTTCTCGTATAATGAAAAACATTGTTGAAGTTGAGCAAGGTCAAGAGGGAAAGGAAAAGTATTGGTTTTCTGAAGCACGTGTTCCTTTATATTTGGTAAAAGAGTATGAAGAAGGCATAGAAAGAAAGCCATCTCATCAAGAGAACTTGAAGTTGGAATCTCAGCTGCAAAGAAGGCGGTTGAAAGCTGCTTGCAATGATATATTTTTTTACCTTACCTGCAAGAGAGACAACTGGGACATATTTTCATGTGCTGCATGTCAGATGGATGTTTTAGCTGGGAATGCTCTCAAGTGCAATGCATGTCAAGGTTATTGCCATGAGGGCTGTTGTATAAGTTCGACATTCTCTACAAACAAGGTGGTTGAGTTCTTAGCCACATGCAAGCGCTGTTATGCCAAATTACTTGCTCAAAAAAAGACCAGTGACGAATCCCCGACCAGTCCCTTACTCTTGCAAGGACAAGAACATAGCTCTGTCACTGTTCTGAAGGGACCAAGACCTAAATGTTATGATCAAGCCTTGAAACCTATCAGCATCAAGGATACTCGTCTCGACATGAAAGAAGGCACTCCTGATTCTGCTCAAGCAACGAAAAATCGCCGTAGGTCTTGTTCTTGGGGTATTATATGGAATAAGAAGAATGAGGACACAGGCGTTGATTTTAGGCTTAAAAATATACTTCTAAAAGGAGGTATAGGTGCACCTGGATTACAACCTGTTTGTCACTTGTGCCGTAAGCCATATAGGTCTGATCTGATGTATGTCTGCTGTGAGACATGCAAAAATTGGTATCATGCTGATGCCCTTGAACTAGACGAGTCAAAAATTATTGAAGTGTCAGGCTTCAAATGCTGCAAGTGTCGCAGGATAAAATCTCCAGAGTGTCCTTACTCTGATAAGAAGCCCAAGATACAGGGGAGCACTAAGAAACACCGGAGACCTTCAAAGAAGGATAGTTCTAGCACTGACAATTTTGGAGTTATTTCTGAACCAAAAGAGTTTGAGCCTGCTACCCCTAACTTTCCTATAGGAGACGATGGATTGAGACATGACAATGACCCTCTGCTTTACTCTCTTTCAAGTGCTGAGCTGATAACAGACCCTAATACAGAAGCAAATGCTGTCTCTGATCTGGGGCTTGGGAAACTACCAGTGAGAAGACATGTTAAGCGTGAGGGGGATGGTGATGAATCCTTTGGAACTAAACTTTCACAGGAAATTTTAACACAAAATGGAGCAGGTAGTCTGTCATCTGTGGAGAAGGCATCATCTCCTGTGGAATATGACCATGCCGTTTGCTTAGATAGTAATCTGCTGAATGACTGTGGAAATGAAACTTATGAGTTCATGGACTTTGAACCCCATACCTACTTCTCTGTAACAGAATTGCTACAGCCAGATGATAATCACTTTGAGGGAGCTGATGGATCTGGGGACTTTTCTGGATACTTGGAAAATGTTTCCACTGCAAATATAGATGGCATTCCTGAAGAATCTGGAGCTCCTTGTTTAGTTGATAAACAAGAACCCGTGGCTTATATACCAGGCAGTGGTTACCATTGTTGCAGATGCTTGCATATGGAACCAGCTCCTGATCTCTCTTGTGACATTTGTGGGATTTGGATTCACAGCCAATGCTCACCCTGGGTTGAGTCACCTTCTAGATTAGGAAGCTGGAGGTGTGGGAATTGTCGTGAATGGTACTAG 4980 0.4203 MEAPVVRSRGRPRKRRRKEDENGTDDGGSVPDLKKQAVGTRRPIALVGRYILKEFKGSGVFLGKVVYYECGLYRVNYEDGDYEDLDSNEIRGMLLNDCDFDDEFSKRRNKLDQLVLKFSAKETYGTENSSADLKKDVLSLEAPASSELPGGSLIEPDEVDVEEDAHSSSDERDSASDAEIPSLPPPLQLPPSSGTIGVPELYVSHLLAVYGFLRSFSIRLFLSPFSLDDFVGSLNCQVSNTLFDSIHVSLMRTLRRRLETLSSEGSEHASKCLRCNDWGLLDALTWPVFVIQYLAIYGYTKGPEWKGFYDEIFNGEYYLLPVSRKLTILQILCDDVLESEEMNAEMGIREELEVGMEYDAQDILPEENWPRSHPRNAKIASMDKEVKKFGLESNAVKPPSNSVLDFRDRRRTEDADVDRNGDECRLCGMDGTLLCCDGCPSAYHSRCIGVMKMFIPEGPWYCPECKINMNGLSIARGTSLRGAELFGMDLYGQLFMGTCDHLLVLTVNSELCLRYYNQNDISKVLQVLCASVDHRPLYSQICMAVLHYWSIPESILPVSVRSGTDANNSSTEEDAKFSSLSATPLGAKENISFDLVKAEHPVDSGIVIHGNYMVPSDSLVSTTRGAYAFESSNDTRTRECFAMNTTFPKETRMASVISGGPGGHQRSPFDVTNSHGRANDRQLPFIPSLQLKEGNQACSGKVEHNSTKDFTYMGFSFKPQSYVNHYMHGDFAASAAGKLAILSSEDSRSEGHVSDNLRKFTAESASLQAKAFSMTVSRFFWPSSEKKLVEVPRERCGWCLSCKASASSKRGCMLNHAALSATKSAIKVLSGLSTIRSGEGSLQSIATYIIYLEESLHGLIVGPFLNANYRKQWRKRVEQAKTFKAIKPLLLELEENVRIISFTGEWVKLMDDWLVESFIIQGASSSVGTIQTRAPSGRRHKKQSAIDEVTADGSQEKNFDWWHGGKSMKILFLKAVLPKSAVRKAARQGGSKKIFGISYADGFEIPKRSRQIVWRAAVQMSRNVSQLALQVRYLDFHLRWSDLICPEQNLQDGKGQETESSAFRNANICDKKEVGGKLLYGVVFRNQKHLPSRIMKNIVEVEQGQEGKEKYWFSEARVPLYLVKEYEEGIERKPSHQENLKLESQLQRRRLKAACNDIFFYLTCKRDNWDIFSCAACQMDVLAGNALKCNACQGYCHEGCCISSTFSTNKVVEFLATCKRCYAKLLAQKKTSDESPTSPLLLQGQEHSSVTVLKGPRPKCYDQALKPISIKDTRLDMKEGTPDSAQATKNRRRSCSWGIIWNKKNEDTGVDFRLKNILLKGGIGAPGLQPVCHLCRKPYRSDLMYVCCETCKNWYHADALELDESKIIEVSGFKCCKCRRIKSPECPYSDKKPKIQGSTKKHRRPSKKDSSSTDNFGVISEPKEFEPATPNFPIGDDGLRHDNDPLLYSLSSAELITDPNTEANAVSDLGLGKLPVRRHVKREGDGDESFGTKLSQEILTQNGAGSLSSVEKASSPVEYDHAVCLDSNLLNDCGNETYEFMDFEPHTYFSVTELLQPDDNHFEGADGSGDFSGYLENVSTANIDGIPEESGAPCLVDKQEPVAYIPGSGYHCCRCLHMEPAPDLSCDICGIWIHSQCSPWVESPSRLGSWRCGNCREWY 1659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00402 1659 CDD PHD_SF 1331 1378 - -
Accr13g00402 1659 SUPERFAMILY FYVE/PHD zinc finger 396 467 IPR011011 -
Accr13g00402 1659 SUPERFAMILY FYVE/PHD zinc finger 1606 1657 IPR011011 -
Accr13g00402 1659 MobiDBLite consensus disorder prediction 144 191 - -
Accr13g00402 1659 Pfam DDT domain 203 256 IPR018501 -
Accr13g00402 1659 ProSiteProfiles DDT domain profile. 200 260 IPR018501 -
Accr13g00402 1659 ProSiteProfiles Zinc finger PHD-type profile. 421 468 IPR019787 -
Accr13g00402 1659 SMART testlast3 200 260 IPR018501 -
Accr13g00402 1659 MobiDBLite consensus disorder prediction 1 34 - -
Accr13g00402 1659 ProSitePatterns Zinc finger PHD-type signature. 424 465 IPR019786 -
Accr13g00402 1659 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 304 353 IPR028942 -
Accr13g00402 1659 PANTHER PHD FINGER FAMILY PROTEIN 42 1389 - -
Accr13g00402 1659 CDD PHD_SF 1611 1655 - -
Accr13g00402 1659 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 407 482 IPR013083 -
Accr13g00402 1659 MobiDBLite consensus disorder prediction 1389 1429 - -
Accr13g00402 1659 SMART PHD_3 1611 1656 IPR001965 -
Accr13g00402 1659 SMART PHD_3 1173 1222 IPR001965 -
Accr13g00402 1659 SMART PHD_3 1331 1379 IPR001965 -
Accr13g00402 1659 SMART PHD_3 423 466 IPR001965 -
Accr13g00402 1659 Pfam PHD-finger 424 466 IPR019787 -
Accr13g00402 1659 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1325 1395 IPR013083 -
Accr13g00402 1659 CDD PHD2_CHD_II 424 465 - -
Accr13g00402 1659 SUPERFAMILY FYVE/PHD zinc finger 1329 1384 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00402 Accr-Chr13 3995599 4002284 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00402 290 572 EF-hand Containing Proteins AT5G22760 46.392 2.04e-69 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Accr13g00402 DDT 1.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00402 - - lang:109351702 1921.75