Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00384 ATGGCTATTGTTGGTGTGCACAATGTGTCAGTGCTTGACTCTTCTTTTCTTAGGGACTCTCATTCTCAATCGTCAAGTAGGCATGGAGATGGAAGCAGGGAAAGCTCTCAGTCATCTTCTTCACTCTTGCCACTATGGCAAGAGATTGAGGATAAACAAGAGGAGCTAAACAACTCTAGCTGTGAAAACTCTTCTGATCTTGGAGATCCTGAAAGGGAAAGAGTAAGGAAAATTTTCAGAGAATGGATGAACAGTTCTGGTGCTAGAGATGAAGCATCCACCATTTCCATTAGACATAACAGTCCCAGGGAAGAGTGGCTTGGCGAAACGGAGCAAGAGAGAGTGAGAATCATAAGGGAGTGGGTACAAATGAGTAGCCAGAAACAGAGTGGGGTTTCTTCTGGGGACAATAGAGAGGAGCAATCTGCAGAAATTGAACGTGCTCGTAATGGATTTGTGATGGACAAAAATGAAGGCCAGAGTGAGCAAACTCGTAGGGGGATTCGGAAATTATGTGGCAGACAGGTTTTGCTTGATATGCTAAACAAGGCTGAGAGAGAAAGGCAGAGAGAAGTTCAGGAGTTGTTAGACCAGAGGGCTGTGTCTCATTTTCCCCATCGCAATCGAATTCAGGCTTTGCTGAGAGGCAGGTTTCTGAGAAATGATAGAGTTGCTGATAAGAAAAGGACCACTTCTGTGTCGGACAGTGAATTAGGCTTATTGAGGCAAAAGCAGACTGTATCAGGTTTAAGGGAAGGATTCTTCTCCAGAAAGAATAGTTCTGGTTGCCGTTTAGAAAGCAACAATTTACCTGATACCTCATCAAACAGTGACATTGATGAAGCCAGCAGCTCACAAAGTTCCCCAAATGTACATTCCAAACCATCCAAGCCCAATTATCAAGCAACTGATATAACTCAGATATCAGGTGATCACATTTGTCTGCAGAGACCTCCCCTTGAGAAATTAGAATGGAAAGAATCCCCTGCTCCTGTCGAAGCAGAGGGACCGCAGGATTTGAAAATTGAATCAAGAGATTTCCAGTCACCAACCAATGTTGGGATCGAAAGAAGAGATGATGACTCTCCACAAAGTGTTCATGTGGTGTCAACTGAAGAAGATACGTCAAAGGAACTTTCCCCATCATGTTTGCCAATTGAAGATACAGAGCATTGCTCTCTGCAGATGTTCGGTGAGGAGGACCATAACGAACAATCTGATCATGGATATTATTCAGAGGAAAATATCATTGATGAAGATAACTTGAATGAAAATGTTGCTCTGGAAGGAGAGCTTCCCATATATTTTGGAAATGATGGAAGTGAAAGTCTTCCACTTGATGCTGAACAGAGAGACAACACTGAGGAAAGTAGGGATCTTAATCATCCAACTTCTACAGCAAACGAGAGGCCCCAACACATGTTGCAGAACGAAGATGATGAAGACCCTCATGTTCAAGAACCATATGATTTGCGGTGGCCACGAGGTGATCGCGCTGAAGAACCAATTGAAAATTTTTCAGGAGGAGCTTCTGATCATGAAGGTACTGCTACAGTTGGCGGAACTCACGTAATTTATTTTTCTGATGATGACAATGCGCACAGCGGAGAACTCAATGAACTGTTAAATAGGAGACGTGTTTCTAGTCTCCTTAGCAGTAGTTTTCGCGAGAATCTGGATCAGCTGGTAAGATCATACGTAGAAAGACAGAATCATGCCCAAACGGAGTGGGAGCTGCAAGAGGAGGATGAAGAAGTCTACCTGGAGCAGCAAGCTGTGGATCAGATTGGTGGTCAAGATGGTCCTTCTGAAAGCCCCACTTTCTTGCCCTCATCACCAACTCAATCTTCTCGACCATTTTGGGACCAACAAAATGACATGAATGATCAACATAATGGAATTGAGTGGGAGATTATTAATGGTTTAAGGGTTGACATGGCTGTGCTACAACAGAGGATGAATGAAATGCAGAGAATGCTGGAAGCCTGCATGGATATGCAGCTTGAGCTGCAGCGTTCATTGAGGCAAGAAGTTTCTGCAGCACTTCTTAATTGCTCAGATAATGGGTCCACGAGATTCCGGGACCATGATTCCCAAAATGATGATAACTCAAAGTGGGAGTGTGTGAGGAAAGGACTATGCTGTATATGTCGTGAGAGACATATTGATTCTCTATTGTACAGATGTGGGCACATGTGTACATGTTCAAAATGTGCAAACGAATTGTTACAGGGCAAGAGAAAGTGCCCAATGTGTCAAGCACCTGTGGTGGAAGTGATACATGCTTATTCCATACTCTAA 2301 0.4355 MAIVGVHNVSVLDSSFLRDSHSQSSSRHGDGSRESSQSSSSLLPLWQEIEDKQEELNNSSCENSSDLGDPERERVRKIFREWMNSSGARDEASTISIRHNSPREEWLGETEQERVRIIREWVQMSSQKQSGVSSGDNREEQSAEIERARNGFVMDKNEGQSEQTRRGIRKLCGRQVLLDMLNKAERERQREVQELLDQRAVSHFPHRNRIQALLRGRFLRNDRVADKKRTTSVSDSELGLLRQKQTVSGLREGFFSRKNSSGCRLESNNLPDTSSNSDIDEASSSQSSPNVHSKPSKPNYQATDITQISGDHICLQRPPLEKLEWKESPAPVEAEGPQDLKIESRDFQSPTNVGIERRDDDSPQSVHVVSTEEDTSKELSPSCLPIEDTEHCSLQMFGEEDHNEQSDHGYYSEENIIDEDNLNENVALEGELPIYFGNDGSESLPLDAEQRDNTEESRDLNHPTSTANERPQHMLQNEDDEDPHVQEPYDLRWPRGDRAEEPIENFSGGASDHEGTATVGGTHVIYFSDDDNAHSGELNELLNRRRVSSLLSSSFRENLDQLVRSYVERQNHAQTEWELQEEDEEVYLEQQAVDQIGGQDGPSESPTFLPSSPTQSSRPFWDQQNDMNDQHNGIEWEIINGLRVDMAVLQQRMNEMQRMLEACMDMQLELQRSLRQEVSAALLNCSDNGSTRFRDHDSQNDDNSKWECVRKGLCCICRERHIDSLLYRCGHMCTCSKCANELLQGKRKCPMCQAPVVEVIHAYSIL 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00384 766 MobiDBLite consensus disorder prediction 352 374 - -
Accr13g00384 766 Coils Coil 639 666 - -
Accr13g00384 766 SUPERFAMILY RING/U-box 713 759 - -
Accr13g00384 766 MobiDBLite consensus disorder prediction 328 384 - -
Accr13g00384 766 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 689 764 IPR013083 -
Accr13g00384 766 Coils Coil 174 201 - -
Accr13g00384 766 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 766 - -
Accr13g00384 766 CDD mRING-HC-C3HC5_NEU1 714 763 - -
Accr13g00384 766 ProSiteProfiles Zinc finger RING-type profile. 714 753 IPR001841 -
Accr13g00384 766 MobiDBLite consensus disorder prediction 258 302 - -
Accr13g00384 766 MobiDBLite consensus disorder prediction 438 487 - -
Accr13g00384 766 MobiDBLite consensus disorder prediction 17 49 - -
Accr13g00384 766 MobiDBLite consensus disorder prediction 596 626 - -
Accr13g00384 766 MobiDBLite consensus disorder prediction 473 487 - -
Accr13g00384 766 Pfam Zinc finger, C3HC4 type (RING finger) 711 758 - -
Accr13g00384 766 MobiDBLite consensus disorder prediction 445 463 - -
Accr13g00384 766 MobiDBLite consensus disorder prediction 29 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00384 Accr-Chr13 3844870 3848427 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00384 714 760 C3H Transcription Factor Family AT3G06140 40.426 2.87e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00384 - - gmx:100801329 712.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g03406 1 70612116 70615739 Accr13g00384 13 3844870 3848427 CCT
Accr13g00384 13 3844870 3848427 Accr13g00384 13 3844870 3848427 ECH