Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00382 ATGGCGAACGGTAAGGATTCCGACGAGTTCCTGGTGTTGTCGAGGGTCCGGACGGGTCTGAAGAGGGAGTTTGCATTCGCCATGAAGGCTCAATCCGAGATCTGTGGATCTCTGGGACGGACCCGTGCCAGCAAATTCAAGAATGGGGTTCACGAAACTCCCAGCAACAAGAGGTCCAAGAAATCTGGCTCATCTAGGGCTAAGAGAGACGAGCCGAATGGTACGAAGCCTGTGCCCGAGGATGTTGTCGAACCCATTGTTTTGGAAGAGGTCAAAGGAAAGGAGGTAAAGGCTGTACAGGATATGGAGGATGTTATGAGCGAGGAGGAGGCAAAAAGCGATGTGGTGGATTTATCGGGTGACGACGAACCCAAGAACCCAGTGGGTGAGTCGATGGGCACGAGGGAACCCATGGATTGTGATGAGGAGCCCAAGGGCGATGACGTAGAAACTGTAAGCGACGATGAGCCGAAAAGTATTCCAATGTCGGAATCATTGAAGGAAACAACAATGGATGATATAGCGCAACCCATTTGCCAACCCGAGTCCAAGGAACATCAAACAAATGAAGACGATGTCCAGAAGTCTTTAACGACTGAGAACTTGAGGGGAGGAGAGACATGTTCTCCAGATGAAAAGGGTGCTATTGTAACTACTCCTGTTTCGCTTAATGATGACACTAAGGTGAAGGCAATGATAGGGGGTCCAGTGAGGCGGTTTACGCGGTCGGCTCTGAGACAACAGCAAGATGATTCGAAGCTCTCAACTGAAGGAAAAGAAGCTTGTGATACAGCCATTGGACTTGGTGATGTTAGGAGGGAAAGTGAAGATGCTCCATTAATCACTACGCCTCAAACAAAAAGGTCGAAGAATATTGCCTCGAAGAAGAAGTTCCCTTCGAAGCTCAAGGACCTTCTAGCCACCGGGATTCTTGAAGGGCTGCCTGTCCATTATGTTCGGGGAGTGAAGACACGAAGGCCTGGAGAAACAGGGCTCCGAGGAGAGATTAGACGCTCTGGGATTTTGTGCTATTGCGAAGTTTGTAACGGGGTTGAGGTTGTATCACCCACCGTGTTTGAGCTGCACGCCGGTAGTGCAAACAAACGCCCCCCAGAATACATATACCTTGAGAACGGGAATACGCTCCGTGATGTCATGAATACATGTTCGAGCGTTGCAATGGATGTTTTGGAGGAATCAGTACAGAAAATCCTCGGGGACTTCACCTTTAAGAAATCTGCTATCTGTTTGAATTGCACAGAGGCCATGTCTCAAGCTGGCAAGGGATGTTCGAGACTACTCTGCGATACATGCGTGGTCTTTAAAGATTCTCAACCTAGCCCTGTTCGAATAGCTGAGGCTAGCAATTCCTGTTCTTCACCTTTAGTTACTCTCAGTTCTCCTGAACCAGTTGTCGTTCCAACAATACTAAACAGTGGGATGAAGCATTCGAACTACTCTAGGTCTTCAGAACCAGTAGTCGTTCCAACAATACTAAACAGTGGGATGAAGCATTCGAACTACTCTAGGTCTTTAGAACCAGTAGTCGTTCCATCAACTTTAAACAGTGGGATGAAGCACACAACTTCTCGTGGCAAGAGTCAAGGAAGAATAACTAAAAAGGATCTCCGATTGCATAAATTGGTTTTTGAGGAAGATGTGTTGCCTGATGGAACTGAAGTTGCCTACTATGCTCGTGGACAGAAACTCTTGGTGGGTTACAAAAAGGGTTTTGGAATTATTTGTAGCTGCTGTGACACTGAGGTGAGCCCCTCACAATTTGAAGTTCATGCTGGTTGGGCATCGCGACGCAAGCCTTATCTGCACATCTACACATCCAATGGTGTCTCTCTCCACGAATTGTCCATTTCTCTATCAAGAGGTCGGAGGTTTTCTACAAATGAAAATGATGATCTCTGCAGCATCTGCTCAGATGGAGGGAATCTTTTGTGTTGTGATGGATGTCCAAGGGCTTTTCACATAGATTGTGTTCCTCTGCCATGTATTCCAACTGGAACTTGGTATTGTAAATATTGCCAGAACGTGTTCCTAAAGGACAAATATGTGGAGCATAACATGAATGCATTGGCAGCAGGAAGGATTGCAGGGATTGATCCTTTAGAACAGATAAGTCAAAGATGTATTCGCATAGTCAAAACTGTAGAGGTTGACCATGGTGGATGTGCATTATGCAGAAGCCATGATTTCAGCAAGATCTTTGGTCCTCGAACAGTGATTATATGTGATCAGTGTGAAAGGGAATATCATGTAGGCTGTTTGAAGGAGCATAACATGCAGAACTTAGAGGAATTGCCTGAAGGAAATTGGTTCTGCTGCACTGATTGCAGGCGCATTCATTCTGCTCTGCTTAATATGGTCTCTTGTGGGGCAGAGAATCTTCCAGATTCTCTATTAAGTATGATACAAAAGAAGCATGAAGAAAAGGGCCTGGAAAATGGGCATGGTTTAAATATAAAATGGAGAATCTTAAATTGGAAACTAGCTGCTTCTGATGAAACAAGGCAACTGCTTTCGAAGGCTGTTGCAATCTTCCATGAGCGGTTTGATCCAATAGTTGATTCAAGTTCAGGCCGTGATTTCATTCCAACAATGCTTTATGGAAGGAACATTAGGGGTCAAGATTTTGGTGGGATGTACTGTGCAGTGCTAACAGTGGATGGAGTGGTTGTTTCTGCGGGTGTATTTCGTATATTTGGGGCAGAGGTGGCAGAGCTTCCATTAGTGGCAACAATTGCAGATTGCCAAGGAAAGGGTTACTTCCAGTCCCTGTTTTCTTGCATTGAAGGGCTGCTGGGATCTTTAAATGTGAAACATTTCGTCCTACCAGCTGCTGAAGAAGCGGAATCAATATGGAGGAGTAAATTTGGTTTTACCAAGTTAGAACTAGACAAGGTGAACGATTATAAGAGATTCTTTCACATGATGATATTTCAAGGGACCTCTGTGCTGTGGAAGTCAGTTCCTACTCCACCAGAATTGTGTGTCAATGCGGTGTAG 3018 0.4549 MANGKDSDEFLVLSRVRTGLKREFAFAMKAQSEICGSLGRTRASKFKNGVHETPSNKRSKKSGSSRAKRDEPNGTKPVPEDVVEPIVLEEVKGKEVKAVQDMEDVMSEEEAKSDVVDLSGDDEPKNPVGESMGTREPMDCDEEPKGDDVETVSDDEPKSIPMSESLKETTMDDIAQPICQPESKEHQTNEDDVQKSLTTENLRGGETCSPDEKGAIVTTPVSLNDDTKVKAMIGGPVRRFTRSALRQQQDDSKLSTEGKEACDTAIGLGDVRRESEDAPLITTPQTKRSKNIASKKKFPSKLKDLLATGILEGLPVHYVRGVKTRRPGETGLRGEIRRSGILCYCEVCNGVEVVSPTVFELHAGSANKRPPEYIYLENGNTLRDVMNTCSSVAMDVLEESVQKILGDFTFKKSAICLNCTEAMSQAGKGCSRLLCDTCVVFKDSQPSPVRIAEASNSCSSPLVTLSSPEPVVVPTILNSGMKHSNYSRSSEPVVVPTILNSGMKHSNYSRSLEPVVVPSTLNSGMKHTTSRGKSQGRITKKDLRLHKLVFEEDVLPDGTEVAYYARGQKLLVGYKKGFGIICSCCDTEVSPSQFEVHAGWASRRKPYLHIYTSNGVSLHELSISLSRGRRFSTNENDDLCSICSDGGNLLCCDGCPRAFHIDCVPLPCIPTGTWYCKYCQNVFLKDKYVEHNMNALAAGRIAGIDPLEQISQRCIRIVKTVEVDHGGCALCRSHDFSKIFGPRTVIICDQCEREYHVGCLKEHNMQNLEELPEGNWFCCTDCRRIHSALLNMVSCGAENLPDSLLSMIQKKHEEKGLENGHGLNIKWRILNWKLAASDETRQLLSKAVAIFHERFDPIVDSSSGRDFIPTMLYGRNIRGQDFGGMYCAVLTVDGVVVSAGVFRIFGAEVAELPLVATIADCQGKGYFQSLFSCIEGLLGSLNVKHFVLPAAEEAESIWRSKFGFTKLELDKVNDYKRFFHMMIFQGTSVLWKSVPTPPELCVNAV 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00382 1005 SUPERFAMILY FYVE/PHD zinc finger 719 785 IPR011011 -
Accr13g00382 1005 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 883 973 IPR016181 -
Accr13g00382 1005 MobiDBLite consensus disorder prediction 103 172 - -
Accr13g00382 1005 FunFam PHD finger family protein 824 993 - -
Accr13g00382 1005 CDD PHD1_AIRE 639 679 - -
Accr13g00382 1005 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 627 702 IPR013083 -
Accr13g00382 1005 MobiDBLite consensus disorder prediction 45 86 - -
Accr13g00382 1005 ProSiteProfiles Zinc finger PHD-type profile. 725 785 IPR019787 -
Accr13g00382 1005 PANTHER AUTOIMMUNE REGULATOR 73 993 - -
Accr13g00382 1005 ProSitePatterns Zinc finger PHD-type signature. 640 679 IPR019786 -
Accr13g00382 1005 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 722 785 IPR013083 -
Accr13g00382 1005 MobiDBLite consensus disorder prediction 103 124 - -
Accr13g00382 1005 Gene3D - 824 986 - -
Accr13g00382 1005 Pfam Tify domain binding domain 334 389 IPR032308 -
Accr13g00382 1005 Pfam Tify domain binding domain 573 621 IPR032308 -
Accr13g00382 1005 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 626 703 - -
Accr13g00382 1005 SUPERFAMILY FYVE/PHD zinc finger 628 681 IPR011011 -
Accr13g00382 1005 SMART PHD_3 639 680 IPR001965 -
Accr13g00382 1005 SMART PHD_3 727 783 IPR001965 -
Accr13g00382 1005 MobiDBLite consensus disorder prediction 37 86 - -
Accr13g00382 1005 ProSiteProfiles Zinc finger PHD-type profile. 637 682 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00382 Accr-Chr13 3802556 3808384 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00382 270 994 PHD Transcription Factor Family AT2G36720 45.707 0.0 645
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00382 - - pcin:129313514 1654.8