Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00378 ATGGGCATGGACGCCACCACTGAGCAGCTTGTGGGGCCGCCCAAAGGCAAACGCACCAAACGCCACAGGCCTTTCTCCTCCGCTCTCACTCACTCCACCTCTTCCTCTGCTTCCGCCGATGATTATACGGCCTCCTTCAATTCCTCTGCTTCTACCGCTTTTGACTCTGCCGTGGATGAAGAAGAAGAAGACATGGCTAATTGCTTGATTCTCTTGGCTCAGAGTGGCGATGCTTCTCACAAGGAGCCTCCTGCCACCACCAAGAATATCAGTGGCTTCTATGTTTACGAGTGCAAAACTTGTAACAAGTCATTCTCTTCTTTTCAAGCCTTGGGTGGACACAGAGCAAGCCACAAGAAACCTAAGGTGGAGCCCCCATCACAACCACTCCCCGTAGCCGCCGCACAAGTTACAGGTTTTGAGGTTGAAGAGGCAGGGGAAGATCAGTTCAAAAGCACTTGTCAGATTTCTCTTCAATCAGCGAGCAACAAGGCTTCCCATGGCAACAAGGCCAAGATTCATGAGTGTTCGATATGTGGGTCGGAGTTTACCTCTGGTCAAGCGTTGGGTGGCCACATGAGGAGGCACAGGGCATCAGCCAACACAACCACCGTGGAAGTGAAGCCCAGGAATGTTCTCGAATTGGATCTCAATTTGCCGGCGCCGGAAGACGATCTCCGGGATTCCAAGTTTCAGTTCAAACCCACGCCGACATCTCTGATGCTGTCTGCTCCGGCTTTGGTGGACTGCCATTACTGA 759 0.5231 MGMDATTEQLVGPPKGKRTKRHRPFSSALTHSTSSSASADDYTASFNSSASTAFDSAVDEEEEDMANCLILLAQSGDASHKEPPATTKNISGFYVYECKTCNKSFSSFQALGGHRASHKKPKVEPPSQPLPVAAAQVTGFEVEEAGEDQFKSTCQISLQSASNKASHGNKAKIHECSICGSEFTSGQALGGHMRRHRASANTTTVEVKPRNVLELDLNLPAPEDDLRDSKFQFKPTPTSLMLSAPALVDCHY 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00378 252 ProSiteProfiles Zinc finger C2H2 type domain profile. 174 201 IPR013087 -
Accr13g00378 252 Gene3D Classic Zinc Finger 94 116 - -
Accr13g00378 252 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
Accr13g00378 252 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Accr13g00378 252 ProSitePatterns Zinc finger C2H2 type domain signature. 176 196 IPR013087 -
Accr13g00378 252 Pfam C2H2-type zinc finger 95 121 - -
Accr13g00378 252 Pfam C2H2-type zinc finger 174 198 - -
Accr13g00378 252 MobiDBLite consensus disorder prediction 26 43 - -
Accr13g00378 252 MobiDBLite consensus disorder prediction 1 43 - -
Accr13g00378 252 SUPERFAMILY beta-beta-alpha zinc fingers 95 196 IPR036236 -
Accr13g00378 252 Gene3D Classic Zinc Finger 147 217 - -
Accr13g00378 252 PANTHER ZINC FINGER PROTEIN ZAT5 48 235 - -
Accr13g00378 252 SMART c2h2final6 96 118 IPR013087 -
Accr13g00378 252 SMART c2h2final6 174 196 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00378 Accr-Chr13 3792085 3792843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00378 1 252 C2H2 Transcription Factor Family AT2G28200 42.434 3.78e-60 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr13g00378 zf-C2H2_6 1.6e-11 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g03413 1 70686442 70687386 Accr13g00378 13 3792085 3792843 CCT
Accr1g03413 1 70686442 70687386 Accr13g00378 13 3792085 3792843 ECH
Accr13g00378 13 3792085 3792843 Accr13g00378 13 3792085 3792843 ECH