Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00377 ATGGAATTCGAACCCCACTTGCTCCTTCCTTCCCTCCCTCAATCCTCTGATTCCTCTATTCAGCATTTCGGCTGCAAACATTACAGAAGGAGGTGTAAGATCAGAGCACCCTGTTGCAATGGAATTTTTGACTGTCGCCATTGCCATAATGAAGCTAAGAACTCCGAAGATATCAATCCTATCGATCGTCACGATATTCCCCGCCACGACATTATGAAGGTCATCTGTTCCTCATGCGAAACAGAACAAGATGTTCAACAATATTGCATCAACTGTGGAATCTGCATGGGGAAGTACTTTTGTGCTACTTGCAAATTCTTCGACGATGATACCTCGAAGAACCAATACCACTGTGATGAATGTGGCATCTGCAGAACTGGAGGCAAGGATAACTTCTTCCACTGTAAGAAATGTGGTTGTTGCTACTCCAATGTGATGAAAGAAGGACACCAATGTGTAGAACGAGCAATGCATCACAATTGCCCTGTTTGTATTGAGTATCTATTTGATACCCTGAAAGATATCACTGTCTTGCATTGCGGCCATACCATACATTTGGAGTGTCTCAGAGAGATGGGGAAACATTGCGGGTATTCGTGCCCTGTTTGTTCAAAATCCATCTATGACATGTCAAGTACATGGAAGAAGCTTGACCGAGTGATTGCTTCGACACAAATGCCTGAAGCTTACAAAGACAAGATGGTATGGATACTGTGCAATGATTGCGGAGTGAACTCTCAAGTGCATTTCCACGTGGTGGCTCATAAGTGTCAGAGTTGTAACTCATACAACACAAGACAGATACAGGGAATCCCTACCACCGCATGCACTTCTTCGGTGACTGAGGTGGTGAAATGA 858 0.4406 MEFEPHLLLPSLPQSSDSSIQHFGCKHYRRRCKIRAPCCNGIFDCRHCHNEAKNSEDINPIDRHDIPRHDIMKVICSSCETEQDVQQYCINCGICMGKYFCATCKFFDDDTSKNQYHCDECGICRTGGKDNFFHCKKCGCCYSNVMKEGHQCVERAMHHNCPVCIEYLFDTLKDITVLHCGHTIHLECLREMGKHCGYSCPVCSKSIYDMSSTWKKLDRVIASTQMPEAYKDKMVWILCNDCGVNSQVHFHVVAHKCQSCNSYNTRQIQGIPTTACTSSVTEVVK 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00377 285 SUPERFAMILY Zinc hairpin stack 97 154 IPR037275 -
Accr13g00377 285 SMART ring_2 161 203 IPR001841 -
Accr13g00377 285 Gene3D - 234 274 - -
Accr13g00377 285 SUPERFAMILY RING/U-box 159 207 - -
Accr13g00377 285 Pfam Zinc-ribbon 209 266 IPR039512 -
Accr13g00377 285 FunFam RING finger and CHY zinc finger domain-containing protein 1 232 275 - -
Accr13g00377 285 ProSiteProfiles Zinc finger CTCHY-type profile. 96 160 IPR017921 -
Accr13g00377 285 ProSiteProfiles Zinc finger CHY-type profile. 18 94 IPR008913 GO:0008270
Accr13g00377 285 SUPERFAMILY CHY zinc finger-like 21 95 IPR037274 GO:0008270
Accr13g00377 285 ProSiteProfiles Zinc finger RING-type profile. 161 204 IPR001841 -
Accr13g00377 285 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 20 269 - -
Accr13g00377 285 Pfam CHY zinc finger 25 106 IPR008913 GO:0008270
Accr13g00377 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 233 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00377 Accr-Chr13 3778618 3780982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00377 13 279 C2H2 Transcription Factor Family AT3G18290 38.768 5.01e-55 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00377 K10144 - gmx:100812709 487.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr13g00377 13 3778618 3780982 Accr13g00377 13 3778618 3780982 ECH